Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2855 ATGAGTTTCACATCCATCCAAAATGCTTCTCCATACTGTAACTGCTTCACGAAATCCTCATATCGCTATAATCCTCCTCCTACTATTGCATTTCAATTGAAACGCGTGATTAGGAATGGGGAACTAATTTTCCCGTTCAAGTCTCGGAGATGCATTCGAGATTACAAATCTGAATCAATTTCCTCGACGATAATGCGAAAACTTAGGGCAATGAAACCTGAACTCGTCGCGAACAAGCTTAAACGGTTGGTTGGTGAATTCAAGTCCCTGAAGGAGCCGATTGATCGACTGAAGAGGCTACTGCATTACGCTACGCTTCTTGCTCCAATGGATGATTCGGCGCGGGTGGATGGAAACAGAGTGGCGGGATGTACGACTGAGGTATGGTTGGAAGTGAAAATGGATGATAATGGAAGGATGAGATTCAAAGCGGACAGCGATTCAGAGATTACGAAGGGATTCTGTTCTTGCTTGATATGGTTGTTGGATGGGGCGGAGGCTGCGGAGGTTATGGCGGTGGAGGTTGAGGATTTGGAGGCCGTGAATTTGGGGTTTGAAATGAAGAGAAAAATGGAGAATCGCCTTAGGAGTTCTTCCTTCTCATTGTTCTTACAAGAGATTGATCACTTCTCCGATTTGAGGCTACGCACGATTTTTCTCCTTCGTCTTCTTCTCGGAGCGACAAAATCATTGTTCTCAAGATTTTTGAATCATGGACATAAAAGGGCTTTTGTTTTTACCTCTGCTCTTGTGATAGTCATGCTGTGCCATTCCTTAATCATTGCTTTCACCACTTTCTTCGCACTTTCACTGATTCCATGCTCTGTCCTAGCCAAACACCCCTGTAATTTTCCGGCTCTCTTCAACTTCGGCGACTCCAACTCCGACACCGGCGGCCTTTCCGCTGTCTTTGGCCAAGCGCCGCCGCCCAATGGGAGGTCCTATTTCCCTGGCCCTGCCGGTCGCTACTCCGATGGCCGTCTTATCATCGATTTCGTAGCCAAAAGCCTTGGGTTGCCTTATCTAAGCGCGTATCTTGATGCTTTGGGAGCCAATTTCAGTCACGGAGCAAATTTCGCGACTGCTGGTTCCACTATTAGACCTCAAAACACAACGCTACAGCAGAGTGGATTCAGCCCTATTTCCCTCAATGTTCAATACAACCAATTCTATGACTTCCGTCGCAGATCCCAAACCCTTCGAAATCGACTCGGTGGCATCTTTGAGCAATTATTGCCAAAGGAAGAGAGTTTTAGTCGGGCCCTTTACACATTTGATATTGGGCAGAACGATTTGACCAGTGGTTACTTTGCCAACATGACTGTCCATCAAGTTAGACTCTATATTCCTCAAGTACTCCACCAATTCTCCGATATCGTCAAGTGGGTGCACAGTCAAGGGGGAAGATTCTTCTGGATCCATAATACGGGCCCAGTGGGCTGCCTTCCATATGTATTGGACCGCAAGCCCGTTCCAGCCTCAGACTACGACCAATATGGCTGCGCCACTCCTTTCAATGACTTGGCCCAATCTTTCAACCGTGGCCTCAAACAAGCTGTCCTTGAGCTTCGCAAAGCTTTGCCCGACGCTGCCATTACCTACGTTGATATTTACTCTCTCAAATATGCTCTTGTTGCCCAACACAAGAAATACGGTTTTGAGTTTCCATTGAGAACTTGCTGTGGACATGGTGGAAAGTACAACTTCAACGTGAAGCTTGGGTGTGGAGCAAAGAAACGAATCAATGGAAAGGATGTTTTGATAGGAAAATCCTGCAAAAACCCAGAGGTTTATGTGAATTGGGATGGTGTTCACTACACTCAGGCAGCTAACAAATGGATCTTTAATCAGATTAAAGATGGTTCTTATTCAGATCCAGCTATCCCTTTGAAGATGGCTTGCTACAGGGCTTTATCTTAA 1920 46.04 MSFTSIQNASPYCNCFTKSSYRYNPPPTIAFQLKRVIRNGELIFPFKSRRCIRDYKSESISSTIMRKLRAMKPELVANKLKRLVGEFKSLKEPIDRLKRLLHYATLLAPMDDSARVDGNRVAGCTTEVWLEVKMDDNGRMRFKADSDSEITKGFCSCLIWLLDGAEAAEVMAVEVEDLEAVNLGFEMKRKMENRLRSSSFSLFLQEIDHFSDLRLRTIFLLRLLLGATKSLFSRFLNHGHKRAFVFTSALVIVMLCHSLIIAFTTFFALSLIPCSVLAKHPCNFPALFNFGDSNSDTGGLSAVFGQAPPPNGRSYFPGPAGRYSDGRLIIDFVAKSLGLPYLSAYLDALGANFSHGANFATAGSTIRPQNTTLQQSGFSPISLNVQYNQFYDFRRRSQTLRNRLGGIFEQLLPKEESFSRALYTFDIGQNDLTSGYFANMTVHQVRLYIPQVLHQFSDIVKWVHSQGGRFFWIHNTGPVGCLPYVLDRKPVPASDYDQYGCATPFNDLAQSFNRGLKQAVLELRKALPDAAITYVDIYSLKYALVAQHKKYGFEFPLRTCCGHGGKYNFNVKLGCGAKKRINGKDVLIGKSCKNPEVYVNWDGVHYTQAANKWIFNQIKDGSYSDPAIPLKMACYRALS 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36189614 36195203 - CcPI632755_05g028550.1 Cco05g2855 180483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2855 639 Pfam GDSL-like Lipase/Acylhydrolase 287 618 IPR001087 GO:0016788(InterPro)
Cco05g2855 639 SUPERFAMILY SufE/NifU 78 178 - -
Cco05g2855 639 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 255 617 - -
Cco05g2855 639 Pfam Fe-S metabolism associated domain 86 184 IPR003808 -
Cco05g2855 639 Gene3D SGNH hydrolase 275 621 IPR036514 -
Cco05g2855 639 CDD SGNH_plant_lipase_like 285 622 IPR035669 -
Cco05g2855 639 Gene3D - 63 207 - -
Cco05g2855 639 SUPERFAMILY SGNH hydrolase 290 619 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2855 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0319 Cco-Chr3:3552622 Cco05g2855 Cco-Chr5:36189614 1.80E-35 dispersed
Cco05g2855 Cco-Chr5:36189614 Cco10g1364 Cco-Chr10:26670450 3.80E-97 dispersed
Cco02g1599 Cco-Chr2:28622572 Cco05g2855 Cco-Chr5:36189614 1.90E-53 transposed
Cco02g1600 Cco-Chr2:28638597 Cco05g2855 Cco-Chr5:36189614 2.00E-12 transposed
Cco06g0332 Cco-Chr6:3732152 Cco05g2855 Cco-Chr5:36189614 8.00E-82 transposed
Cco05g2855 Cco-Chr5:36189614 Cco08g1936 Cco-Chr8:30268158 9.70E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g627 . . . . . . Bma14g01826 Bma15g00223 . Cmo18g00761 . Cma18g00757 . Car18g00690 . Cpe09g00540 . . . . . . . . Cla05g02594 Cam05g2785 Cec05g2823 Cco05g2855 Clacu05g2787 Cmu05g2635 Cre05g2751 Cone13ag1085 . Cone8ag0698 . Lsi04g00603 . . . Blo06g00845 . Bda07g01641 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004340 1 1 1 0 1 1 3 1 1 1 1 1 2 1 1 3 1 4 2 1 1 1 1 1 1 1 1 1 1 6 43