Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2859 ATGATGCATTCAATGGGAAAGAGGTGGGCCCTGAAATGGGCGGTTTGTGGAGACATTGGGCCCAAAGACACTTCCTTAAGCTCCCCCTCTCCGCCATCGCCAGGTTCCTCCATCATTCTGCAACTCAGTGTTCACTTCTCTTTCACTGAACAACTTGGCGCTAACCGCCTCGTCTTTCGAGCCAGTATCACCAAGTGCGTCAAGGTTGGTATAATTGATGAAGCCATACGGATATTCGATGAAATGACTCAATCCAATTGCACTGTAACTAGCAGAGACTACAATCGCTTCATTGGTGTTTTGATTAGCCGCTCACGTTTCGATTTGGCCGAAAGCTATTACTCGAGAATGATACCACAAGGTTTTTCTCTTACTCCATTTACTTACTCCAGGTTCATTTCTGCTTTATGTGAAATTAAGAATTTCGGGCTCATAGGAAGGCTCTTAGAAGATATGCATAAACTTGGCTATCTTCCTGACATTTGGGCATTTAATATATATTTGAATCTCTTATTCCGCGAGAACTTTTTAGAATTAGCTCTAGAATTTTTTGACGAAATGGTTGCGAAAGGAAGGGAACCTGATGTTGTAACATACACTATAATAGTTGATAGATTGTGCAAAGCCAAACAATATGACAAAGCTGTCGAGTTTTGGCGTTGTATGGTTGATAAGGGGCTTACTCCGGACATGAAAGCCTGTACAGCCCTCGTTGTTGGGCTCTGCGATGGTGGGAAGGTTGATTTAGCCTACGAGCTTACGGTTGGTGAAATGAAGGGTCAGATGAAGTTCAACAACTTGATTTTTAATTCTCTGATGAGCGGGTTTTGTAAGGTTGGCCGGATCTCCAAGGCACTGGCCATCAAATCATTTATGAGTAAAAGTGGTTGCGAGCCGGATTTGGTTACTTATAATATTTTGCTGAACTTTTTTTGCGATGGGCTGATGTTAGAGGTGGCCGGAAAGTCTATGAAAAAGATGGAGAGGATAGGAATGGAGCCTGATGTGTATAGTTACAATCAACTTCTTAAAGGTCTTTGCAAAGCTAATAGGCTGGATAAGGCATATAAATTGATGAATAAAATGTGGGCAAAGGGTTTGTGTGATACCGTTTCATACAATACCGTGATAGGTGCATTATGCAAAGCATTGGCAACTAGAAAGGCATACAAGCTGTTTGAGGAAATGGGCCAGAAAGGTGTCGCTCCAGACGTGGGAACATTTGCCACTCTTATAAAAGCATTTCTTAAAGAAGGAAGCTCCCATATTGCGAAGAGACTTCTTCAAAAAATGACAGAGACAGTTCTGTTACCTGATCACATATTTTATACAACGGTCATAGATTACCTTTGTAAGACAGGGAACATTGAGATGGCGCAAGGCGTCTTCCGTGACATGATAGAGATAGGAATTGCCCCTGATGTGGTTTCATATAATGCGCTTATAAATGGGCTTTGCAAGACCTTCAAAGTCAGTGAGGCCATGTTACTTCAAGGGATGCTGGTTAACTATGGAACTAGAATCAAATGGGCCTCATAA 1539 42.11 MMHSMGKRWALKWAVCGDIGPKDTSLSSPSPPSPGSSIILQLSVHFSFTEQLGANRLVFRASITKCVKVGIIDEAIRIFDEMTQSNCTVTSRDYNRFIGVLISRSRFDLAESYYSRMIPQGFSLTPFTYSRFISALCEIKNFGLIGRLLEDMHKLGYLPDIWAFNIYLNLLFRENFLELALEFFDEMVAKGREPDVVTYTIIVDRLCKAKQYDKAVEFWRCMVDKGLTPDMKACTALVVGLCDGGKVDLAYELTVGEMKGQMKFNNLIFNSLMSGFCKVGRISKALAIKSFMSKSGCEPDLVTYNILLNFFCDGLMLEVAGKSMKKMERIGMEPDVYSYNQLLKGLCKANRLDKAYKLMNKMWAKGLCDTVSYNTVIGALCKALATRKAYKLFEEMGQKGVAPDVGTFATLIKAFLKEGSSHIAKRLLQKMTETVLLPDHIFYTTVIDYLCKTGNIEMAQGVFRDMIEIGIAPDVVSYNALINGLCKTFKVSEAMLLQGMLVNYGTRIKWAS 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36220308 36223909 + CcPI632755_05g028590.1 Cco05g2859 180487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2859 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 365 IPR002885 -
Cco05g2859 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 55 89 IPR002885 -
Cco05g2859 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Cco05g2859 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Cco05g2859 512 Pfam PPR repeat family 369 417 IPR002885 -
Cco05g2859 512 Pfam PPR repeat family 268 313 IPR002885 -
Cco05g2859 512 Pfam PPR repeat family 438 487 IPR002885 -
Cco05g2859 512 Pfam PPR repeat family 159 208 IPR002885 -
Cco05g2859 512 PANTHER ATPASE EXPRESSION PROTEIN 3 59 396 - -
Cco05g2859 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Cco05g2859 512 Gene3D Tetratricopeptide repeat domain 212 316 IPR011990 GO:0005515(InterPro)
Cco05g2859 512 Gene3D Tetratricopeptide repeat domain 119 211 IPR011990 GO:0005515(InterPro)
Cco05g2859 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Cco05g2859 512 Pfam PPR repeat 63 87 IPR002885 -
Cco05g2859 512 NCBIfam pentatricopeptide repeat 337 367 IPR002885 -
Cco05g2859 512 NCBIfam pentatricopeptide repeat 163 196 IPR002885 -
Cco05g2859 512 NCBIfam pentatricopeptide repeat 197 230 IPR002885 -
Cco05g2859 512 NCBIfam pentatricopeptide repeat 371 405 IPR002885 -
Cco05g2859 512 NCBIfam pentatricopeptide repeat 443 475 IPR002885 -
Cco05g2859 512 NCBIfam pentatricopeptide repeat 268 300 IPR002885 -
Cco05g2859 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Cco05g2859 512 Gene3D Tetratricopeptide repeat domain 436 502 IPR011990 GO:0005515(InterPro)
Cco05g2859 512 Gene3D Tetratricopeptide repeat domain 41 118 IPR011990 GO:0005515(InterPro)
Cco05g2859 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Cco05g2859 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Cco05g2859 512 Pfam PPR repeat 331 362 IPR002885 -
Cco05g2859 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Cco05g2859 512 Gene3D Tetratricopeptide repeat domain 317 435 IPR011990 GO:0005515(InterPro)
Cco05g2859 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2859 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g620 . . . . . . Bma14g01828 . . Cmo18g00756 . Cma18g00751 . Car18g00685 . Cpe09g00548 . Bhi07g01807 . . . . . . Cla05g02598 Cam05g2789 Cec05g2827 Cco05g2859 Clacu05g2791 Cmu05g2639 Cre05g2755 Cone13ag1092 . . . Lsi04g00608 Csa05g02277 Chy10g00843 Cme10g00587 . . Bda07g01644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006460 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 1 1 1 1 1 0 1 1 1 30