Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g2864 | ATGATGAATAGCATTTTCATTTGGATTCCTCTGCTTTCTCTCTTATTTTCTCTACTTCTTCTCAAAATAAAAAAGCTTCTTTACAACAACAGGAAGCTTAGAACTATAGTTCCTCCTCCAGGCCCTTCACAGCTTCCTCTGTTGGGTCATTTACACCTCATTGGCTCCCACCCCCATCGCTCTTTATGGAACCTTTCAAGAACCCACGGCCCCATCATGCTCCTCAAATTCGGCTCGGTCCCAACCGTGGTCATCTCTTCTGCGGCGGTCGCACAAGAGTTGTTCAAACTCCACGATCTTGCTTCTTGCAGCCGCCCTCGCTTAGCCGCAACCGGAAGATTTTCATACAACTTCTTAGACCTGAATTTATCCCCATACAGTGAACGTTGGAAAGAGCTTCGAAAGGTTTGTATTCTTGAGCTGTTTAGTGCCAAACGAGTGCAGTCTTTTCAACATATTAGAGAAGAAGAAGTGAATTTAGTATTGAATTCCATCTCTCAATCATCAGCTTCTTCAACTGTAGTTGATTTGAAGGCAAAATCTTATTCTCTCACGGCTAATATCTTGACCCGGATCGCTTTTGGGAAGAGCTTTAGAGGGAGTGAACTAGATGATGAGAATTTTGAAGGGTGTATCCAAAGAGCAAGCGCAGCATTGGGAAGCTTCTCGGCGAGTGATTTCTTTCCCGGTTTCGGGTGGATTATTGATCGGCTCACCGGTGTTCATGGGCGTCTGGAGAAAAGCTTTGAGGAGTTGGATGCTTTTTATGAACATGTAGTCAAGGATCGTATTGACTTTTGGACGGCTTTTCAAATGGAAGAAAATATCGTTGATGTTTTGTTGAGAATGGAGAGAGAGAACTCACCCATATTCACTCCAGATTGCATCAAGGCGCTTATCATGGATATATTTCTAGCTGGAGTGGAAACAGGGGCAAATATGATCATTTGGGCAATGGCAGAGCTTGTTAAGAATTCAAAAGTGATGAAGAAGCTACAAGATGAGATCAGAAGCTGCATAAAAGAAGATCAAGTGAAGGAAAGTGAGTTGGAAAAGCTTGGATATCTAAAAATGGTGGTAAAGGAGGTTTTAAGGCTTCATGCGCCACTCCCACTTCTCCTACCAAGAGAAACAATGTCACATTTTAAGCTGAATGGTTATGATATTCATCCCAAAACTCATGTTCATGTGAATGTATGGGCAATTGGACGAGACCCAGAAACTTGGACAAACCCACAAGAATTTCTTCCAGAGAGATTTATGGAAAGCAATATTGATTACAAAGGACAACATTTTGAGTTAATACCATTTGGAGCTGGACGAAGGATCTGTCCTGGTGTGAATATGGGGATTGCAACAGTAGAACTGGCATTGGCTAATATGTTGTTGTGCTTTGATTGGAAATTACCAAATGGAATGAAAGAAGAAGATGTAGACATGGATGAAGATTTTGGTATTACAGTTACCAAGAAGTCACCTCTTCAACTTCTTCCAATTCCTTACTTCAAATCCTATTGA | 1518 | 41.63 | MMNSIFIWIPLLSLLFSLLLLKIKKLLYNNRKLRTIVPPPGPSQLPLLGHLHLIGSHPHRSLWNLSRTHGPIMLLKFGSVPTVVISSAAVAQELFKLHDLASCSRPRLAATGRFSYNFLDLNLSPYSERWKELRKVCILELFSAKRVQSFQHIREEEVNLVLNSISQSSASSTVVDLKAKSYSLTANILTRIAFGKSFRGSELDDENFEGCIQRASAALGSFSASDFFPGFGWIIDRLTGVHGRLEKSFEELDAFYEHVVKDRIDFWTAFQMEENIVDVLLRMERENSPIFTPDCIKALIMDIFLAGVETGANMIIWAMAELVKNSKVMKKLQDEIRSCIKEDQVKESELEKLGYLKMVVKEVLRLHAPLPLLLPRETMSHFKLNGYDIHPKTHVHVNVWAIGRDPETWTNPQEFLPERFMESNIDYKGQHFELIPFGAGRRICPGVNMGIATVELALANMLLCFDWKLPNGMKEEDVDMDEDFGITVTKKSPLQLLPIPYFKSY | 505 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 36260138 | 36262834 | - | CcPI632755_05g028640.1 | Cco05g2864 | 180492 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g2864 | 505 | PRINTS | P450 superfamily signature | 435 | 444 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2864 | 505 | PRINTS | P450 superfamily signature | 358 | 369 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2864 | 505 | PRINTS | P450 superfamily signature | 306 | 323 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2864 | 505 | CDD | CYP71-like | 68 | 494 | - | - | |
| Cco05g2864 | 505 | FunFam | Cytochrome P450 83B1 | 26 | 497 | - | - | |
| Cco05g2864 | 505 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 437 | 446 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco05g2864 | 505 | Pfam | Cytochrome P450 | 39 | 492 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2864 | 505 | SUPERFAMILY | Cytochrome P450 | 39 | 499 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2864 | 505 | PANTHER | CYTOCHROME P450 71B11-RELATED | 17 | 499 | IPR050193 | - | |
| Cco05g2864 | 505 | Gene3D | Cytochrome P450 | 25 | 496 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2864 | 505 | PRINTS | E-class P450 group I signature | 66 | 85 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2864 | 505 | PRINTS | E-class P450 group I signature | 357 | 375 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2864 | 505 | PRINTS | E-class P450 group I signature | 444 | 467 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2864 | 505 | PRINTS | E-class P450 group I signature | 315 | 341 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2864 | 505 | PRINTS | E-class P450 group I signature | 184 | 202 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2864 | 505 | PRINTS | E-class P450 group I signature | 398 | 422 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2864 | 505 | PRINTS | E-class P450 group I signature | 434 | 444 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g2864 | 505 | PRINTS | E-class P450 group I signature | 295 | 312 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g2862 | Cco-Chr5:36229401 | Cco05g2864 | Cco-Chr5:36260138 | 4.90E-158 | dispersed | |
| Cco05g2864 | Cco-Chr5:36260138 | Cco05g2866 | Cco-Chr5:36285927 | 2.50E-165 | dispersed | |
| Cco05g2863 | Cco-Chr5:36247051 | Cco05g2864 | Cco-Chr5:36260138 | 5.30E-219 | tandem | |
| Cco05g2864 | Cco-Chr5:36260138 | Cco05g2865 | Cco-Chr5:36271161 | 5.40E-248 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g2864 | - | - | - | 0.0 |