Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2865 ATGCATATCCTTTCCATCTGGGTCCTTTCTCTTCTCCTTCTCTTGTGTTCTCTGATATTGCTTCTTAAAACAAACAAGAATGTTGAAAAACACAAGAATAATAAGCTTAAAATTGTTCCTCCTCCTACCCCTCCAAAGCTTCCTTTGTTGGGTCATTTACACCTCATTGGCTCTCACCCCCATCGCTCCTTATGGAACCTTTCAAAAACACATGGCCCCATCATGCTCCTCAAATTCGGCTCGGTCCCCACCGTCGTGATCTCTTCAGCAGCCGTCGCACAAGAGTTGTTCAAACAACACGACCTTGCTTCTTGCAGCCGCCCTCGCTTAGCCGCCACAGCAAGATATTCATACAACTACTTAGACTTGATTTTTTCCCCATACGGTAATCATTGGAGGGAGGTTCGAAAGATTTGTATTCTCGAGCTGTTTAGTGCCAAACGCGTGCAATCTTTTCAGCATATTAGAGAAGAAGAAATGAATTTATTATTGAATTCCATCTCCCAATCCTCATCTTCTTCAACTTTAGTTGATTTGAAGGAAAAATCTTATTCTCTCACGGCTAATATATTGACCCGGATTGCTTTTGGGAAGAGCTTTAGAGGGAGTGAACTAGATAATGAGAATTTCGAAGGGGTTATACAAAGAGCAAGCGCAGCATTGGGAAGCTTCTCGGCGAGTGATTTATTTCCTAGTTTCGGGTGGATTATTGGTCGGCTTAACGGTGTTCATGAGCGACTGGAGAAAAGCTTTGCGGAGTTGGATGCTTTTTTAGAACATGTAATCAAGGATCGCATTGACTTTTGGAAGGCTTCTCAAAAGGAAGAAAATTTTGTTGATGTTTTGTTGAGAATGGAGAGAGATTGCTCTGAATTTGGTGCAACCAAATTCACCCGAGATTGCATCAAGGCACTTGTCATGGATATATTTCTAGCTGGAGTGGAAACAGGAGCAAACATGATGGTTTGGGCAATGACAGAGCTTGTTAAGAATTCAAAGGTGATGAAGAAAGTACAAGATGAGATCAGAAGCTGCATAAAAGAAGATCGAGTGAAGGAAAGCGAGCTGGAAAAGCTTGGATATCTAAAAATGGTAGTGAAGGAGGTTTTAAGGCTTCATGCGCCACTTCCACTTCTCCTTCCAAGAGAAACAATGTCACATTTTAAGTTGAATGGTTATGATATTCAACCCAAAACTCATGTTCATGTGAATGTATGGGCAATTGGACGAGACCCAGAAACTTGGACAAGCCCACAAGAATTTCTTCCGGAGAGATTTATGGAAAGCAATATTGATTACAAAGGACAACATTTTGAGTTAATACCATTTGGAGCTGGAAGAAGAATCTGTCCTGGTGTGAATATGGGAATTGCAACGGTAGAACTGGCATTGGCAAATATGTTGTTGTGCTTTGATTGGAAATTACCAAATGGAATGAAAGTAGAAGATGTAGACATGGATGAAGATTTTGGTATTACAGTTACCAAGAAATCACCTCTTCAACTTCTTCCAATTCCTTACTTCAAATCCTATTGA 1536 40.76 MHILSIWVLSLLLLLCSLILLLKTNKNVEKHKNNKLKIVPPPTPPKLPLLGHLHLIGSHPHRSLWNLSKTHGPIMLLKFGSVPTVVISSAAVAQELFKQHDLASCSRPRLAATARYSYNYLDLIFSPYGNHWREVRKICILELFSAKRVQSFQHIREEEMNLLLNSISQSSSSSTLVDLKEKSYSLTANILTRIAFGKSFRGSELDNENFEGVIQRASAALGSFSASDLFPSFGWIIGRLNGVHERLEKSFAELDAFLEHVIKDRIDFWKASQKEENFVDVLLRMERDCSEFGATKFTRDCIKALVMDIFLAGVETGANMMVWAMTELVKNSKVMKKVQDEIRSCIKEDRVKESELEKLGYLKMVVKEVLRLHAPLPLLLPRETMSHFKLNGYDIQPKTHVHVNVWAIGRDPETWTSPQEFLPERFMESNIDYKGQHFELIPFGAGRRICPGVNMGIATVELALANMLLCFDWKLPNGMKVEDVDMDEDFGITVTKKSPLQLLPIPYFKSY 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36271161 36273485 - CcPI632755_05g028650.1 Cco05g2865 180493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2865 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 443 452 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco05g2865 511 Gene3D Cytochrome P450 25 502 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2865 511 PRINTS E-class P450 group I signature 301 318 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2865 511 PRINTS E-class P450 group I signature 363 381 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2865 511 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2865 511 PRINTS E-class P450 group I signature 186 204 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2865 511 PRINTS E-class P450 group I signature 450 473 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2865 511 PRINTS E-class P450 group I signature 321 347 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2865 511 PRINTS E-class P450 group I signature 404 428 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2865 511 PRINTS E-class P450 group I signature 440 450 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2865 511 SUPERFAMILY Cytochrome P450 41 505 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2865 511 CDD CYP71-like 70 500 - -
Cco05g2865 511 Pfam Cytochrome P450 41 498 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2865 511 PANTHER CYTOCHROME P450 71B11-RELATED 19 505 IPR050193 -
Cco05g2865 511 PRINTS P450 superfamily signature 312 329 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2865 511 PRINTS P450 superfamily signature 364 375 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2865 511 PRINTS P450 superfamily signature 441 450 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g2865 511 FunFam Cytochrome P450 83B1 26 503 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0329 Cco-Chr3:3635862 Cco05g2865 Cco-Chr5:36271161 2.60E-117 dispersed
Cco05g2863 Cco-Chr5:36247051 Cco05g2865 Cco-Chr5:36271161 1.10E-213 dispersed
Cco05g2865 Cco-Chr5:36271161 Cco05g2867 Cco-Chr5:36293239 9.30E-115 dispersed
Cco05g2864 Cco-Chr5:36260138 Cco05g2865 Cco-Chr5:36271161 5.40E-248 tandem
Cco05g2865 Cco-Chr5:36271161 Cco05g2866 Cco-Chr5:36285927 2.10E-175 tandem
Cco02g0504 Cco-Chr2:4689928 Cco05g2865 Cco-Chr5:36271161 8.80E-31 transposed
Cco06g1768 Cco-Chr6:28129559 Cco05g2865 Cco-Chr5:36271161 9.20E-86 transposed
Cco07g1274 Cco-Chr7:26758986 Cco05g2865 Cco-Chr5:36271161 1.00E-09 transposed
Cco07g1534 Cco-Chr7:29368898 Cco05g2865 Cco-Chr5:36271161 2.70E-37 transposed
Cco10g1624 Cco-Chr10:29607769 Cco05g2865 Cco-Chr5:36271161 9.00E-86 transposed
Cco10g1935 Cco-Chr10:32920724 Cco05g2865 Cco-Chr5:36271161 9.00E-81 transposed
Cco02g0878 Cco-Chr2:10491878 Cco05g2865 Cco-Chr5:36271161 8.90E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2865 - - - 0.0