Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2872 ATGAGGGTCCCATCATGGCTACTCCCCTGCTCCACCACCGCCGCCGCTTCCGCCGCACAACCCAATAATATTAAACCGCCTGAATCTTCCTCCTACTTAATTTCCGACGCGAGCAGCCTTTCTGACACGTCGGCCAATTCTTCATCGTCGTCGACTCCTAGTTCCGACACTAGCTGTTCCAGTCTCCAAAGCAATCTCTCCCTTCAATCCCTACCGTCCATTCCATCTCTTCAGAAACTCCCCGCCGCCACCGATTCCTTCACCGTCACTCTTTGTCAATTCAACATCGCCTCTTTCAAGCTTCCAATCTCTCATCTCGCCGTTCACGGTGCTTACCTCTACGTCGCCACCGCTCACGAAATCAACGTCTACGATCGAATCACTTTCTCCCACATCACCGCATTCAACGCTCGAGATTCCTCCTCCGGTTCCGTTAAGGGAATCGCCTTTCTCCGCCGCGAAATCCTCACGTCTCACCAAGACGGAAAAATCCGCGTCTGGAATTTACCTGAGAAAAACAACAATCAATTCAAATTGGTCAACACTCTCCCTACAGTCAACGACCGCCTTCGCCGATTCATACTCCCGAAAAATTACGTCAACGTCCGTCGTCACAAGAAGGTCCTCTGGATTCAACACGCCGACGCCGTCACCGGGCTCGCTGTGAACAACGATTCTATTTACTCTGTTTCTTGGGATCGGAGTTTGAAAGTGTGGCGAGGCTCGGACCACCGCTGCGTCGAGTCGGTGAAAGCGGCTCACGAAGACGCCGTGAACGCGGTGGCTGTTTCCGCCGGGGGGACTGTGTACACCGGTTCAGCCGATCGGAAAATCCGAGTGTGGGAGAAACCGGAGGCAGAGAAACGACACGTGCTGGTAGCGACTTTAGAGAAGCACAAATCGGCGGTGAATGCATTAGCGTTAAACGAGGAGGGTTCGTTACTTTTCTCCGGGGCTTGTGATCGGTCAGTTCTGGTTTGGGAAAGAGAAGAGAGTGCGAATTACATGGCGGTGATCGGCGCATTGAGGGGTCACAAAAATGCGATTCTGTGTTTGATCTACGTCTCTGATTTGTTGCTGAGTGGGTCGGCAGATCGGACGGTGAGGGTGTGGCGACGTGGAGGAGATGGGAGTTATAGTTGTTTGTCTGTTCTTGAAGGTCATAAAAAACCGGTGAAATCGCTGGTGGTTGTGTCGGAGGCGGAGGGATTGTCAAACGGTGTCGTATCGGTGTGTAGTGGGAGTCTTGATGGACAGCTCATAGCTTGGAAACTCTCTTTTACGAATCTCAACAGTCCATTGCCCAATTCCAATATTATGAACTGTAGGCATTTGGAATAA 1341 51.75 MRVPSWLLPCSTTAAASAAQPNNIKPPESSSYLISDASSLSDTSANSSSSSTPSSDTSCSSLQSNLSLQSLPSIPSLQKLPAATDSFTVTLCQFNIASFKLPISHLAVHGAYLYVATAHEINVYDRITFSHITAFNARDSSSGSVKGIAFLRREILTSHQDGKIRVWNLPEKNNNQFKLVNTLPTVNDRLRRFILPKNYVNVRRHKKVLWIQHADAVTGLAVNNDSIYSVSWDRSLKVWRGSDHRCVESVKAAHEDAVNAVAVSAGGTVYTGSADRKIRVWEKPEAEKRHVLVATLEKHKSAVNALALNEEGSLLFSGACDRSVLVWEREESANYMAVIGALRGHKNAILCLIYVSDLLLSGSADRTVRVWRRGGDGSYSCLSVLEGHKKPVKSLVVVSEAEGLSNGVVSVCSGSLDGQLIAWKLSFTNLNSPLPNSNIMNCRHLE 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36333758 36335098 - CcPI632755_05g028720.1 Cco05g2872 180500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2872 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 251 291 IPR001680 GO:0005515(InterPro)
Cco05g2872 446 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 38 426 IPR045182 -
Cco05g2872 446 SUPERFAMILY WD40 repeat-like 110 426 IPR036322 GO:0005515(InterPro)
Cco05g2872 446 SMART WD40_4 128 168 IPR001680 GO:0005515(InterPro)
Cco05g2872 446 SMART WD40_4 289 328 IPR001680 GO:0005515(InterPro)
Cco05g2872 446 SMART WD40_4 335 372 IPR001680 GO:0005515(InterPro)
Cco05g2872 446 SMART WD40_4 243 282 IPR001680 GO:0005515(InterPro)
Cco05g2872 446 SMART WD40_4 204 240 IPR001680 GO:0005515(InterPro)
Cco05g2872 446 SMART WD40_4 378 424 IPR001680 GO:0005515(InterPro)
Cco05g2872 446 MobiDBLite consensus disorder prediction 15 61 - -
Cco05g2872 446 Gene3D - 16 286 IPR015943 GO:0005515(InterPro)
Cco05g2872 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 342 371 - -
Cco05g2872 446 PRINTS G protein beta WD-40 repeat signature 155 169 IPR020472 -
Cco05g2872 446 PRINTS G protein beta WD-40 repeat signature 359 373 IPR020472 -
Cco05g2872 446 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Cco05g2872 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 337 IPR001680 GO:0005515(InterPro)
Cco05g2872 446 Pfam WD domain, G-beta repeat 252 281 IPR001680 GO:0005515(InterPro)
Cco05g2872 446 Pfam WD domain, G-beta repeat 380 423 IPR001680 GO:0005515(InterPro)
Cco05g2872 446 Pfam WD domain, G-beta repeat 339 371 IPR001680 GO:0005515(InterPro)
Cco05g2872 446 Pfam WD domain, G-beta repeat 212 239 IPR001680 GO:0005515(InterPro)
Cco05g2872 446 Pfam WD domain, G-beta repeat 292 327 IPR001680 GO:0005515(InterPro)
Cco05g2872 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 371 IPR001680 GO:0005515(InterPro)
Cco05g2872 446 FunFam BnaA09g28200D protein 200 286 - -
Cco05g2872 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 296 328 - -
Cco05g2872 446 Gene3D - 287 436 IPR015943 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2872 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2184 Cco-Chr5:30648081 Cco05g2872 Cco-Chr5:36333758 1.60E-33 dispersed
Cco05g2872 Cco-Chr5:36333758 Cco08g1730 Cco-Chr8:28584830 4.70E-30 dispersed
Cco01g1433 Cco-Chr1:26095238 Cco05g2872 Cco-Chr5:36333758 2.50E-48 transposed
Cco05g2872 Cco-Chr5:36333758 Cco06g1956 Cco-Chr6:29739814 2.00E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g602 . . . . . . Bma14g01832 . . Cmo18g00721 . Cma18g00732 . Car18g00682 Sed06g1708 . . Bhi07g01834 Tan04g0134 Cmetu10g0004 Lac13g0117 Hepe10g1568 . . Cla05g02616 Cam05g2804 Cec05g2840 Cco05g2872 Clacu05g2808 Cmu05g2656 Cre05g2772 . Cone19ag1083 . . . Csa05g02258 Chy10g00828 . Blo06g00839 Blo11g01035 Bda07g01648 . . . . . . . Cmo15g00862 Cma04g01790 Cma15g00831 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49