Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2886 ATGGGGTTTCCTCTTTTTTGGGTTTTGATTCTTCTTCTCGTCGTTTCTTCTGTCTATTGTCAGGTTAAAGAGTTCATCAGTATAGATTGTGGAGGGACAAAGAATTTCACCGACCCAGTTACAGGGCTGGCATGGATTTCCGACGCCGAAATTATGAACGCCGGTGGGTCATCACCGGTGGAAAACCCAAATGGAAACTTGATGCAGTACCAAACACGGCGGGACTTTCCAATCGATGATAAGAAGTACTGCTACACTTTGAAAACAGAGGAAAGAAGAAGGTATTTGGTCCGAGCAACTTTTCAATATGGGAGTTTGAAGGATGAAGAAACTTACCCTAAATTTCAGCTCTATTTGGATGCAACTAAGTGGTCAACTGTAACCATTTTTGATGCTTCAAGAGTTTATGTGAAGGAGATGATCGTCAGAGCACCTTCAAATTCATTTGATGTTTGCATATGCTGTGCAACTACTGGTTCTCCATTCATATCCACTCTTGAGCTTCGCCCTTTTAATCTTTCAATGTATGCAACAGATTTTGAGGATAATTTCTTCTTGGAAGTTGCTGCTAGAGTGAATTTTGGTGCTTTAACCAAGGATGCGATAAGGTACCCAGATGATCCATATGACAGAATTTGGGATTCAGACCTTGAGAAGAGGCAGAATTATCTTGTGGGGGTGGCTCCAGGGACAGAAAGAATCAGCACTTTGAACAATATTAATGTAATGACAAGAGAATATCCACCTGTTAAAGTGATGCAGACTGCAGTTCTTGGCTCAAAAGGAGTGCTGAGCTACAGGTTGAATTTGGATGATTTTCCTGCCAATGCAAGAGCTTATGCATATTTTGCTGAGATTGAAGATTTGGGTTGGAACGAGACACGGAAGTTCAAATTGGAGGAACCTAACATTCCGGATTCGAGTAATGCAGTGGTGAATATCGCAGAGAATGCTAATGGGACCTATACTCTTTATGAACCAAGTTATATGAATGTGACTCTGAGTTTCGTGCTTTCGTTCTCATTCGTCAAGACTCGAGATTCGACTCGTGGACCACTTTTGAATGCATTGGAAATTAGTAGATATGTTGAGATTGCTGCCAAGACTGATAGGCGAGATGAGTCTGTTGTGAATGTCTTCCGTAACGTGTCAGCAGAGAATGTTTGGTCACATGAAGGTGATCCTTGTGTTCCAACAAGCTGGGAATGGGTGACTTGTTCTGCCACGCAACCACCGAGAATAACTAAGATAGAGCTTTCCAGAAAGAATGTCAAGGGAGAAATTCCACCAGAGATCAATACTATGGATGGGTTAATGGAATTGTGGTTGGATGGAAATTCCCTTGCTGGACCACTGCCTGACATGAGTAATCTAATAAGCTTGAAGATTTTACATCTAGAGAATAACAAATTGACAGGGACATTGCCTTCTTACCTGGGTAGTTTGCCCAACTTACAGGAATTATATATTCAAAACAATACGTTTTCGGGTGAAATACCTTCAGAATTATTGGCAAAGAAACTCATCTTTAAGTACGACGGTAATGTGGGGCTGCACAAAAGTGAACGATACAAGATGCATTCTAAGCTTATAGTAGGAGTTTCATTGGGAGTGCTTGTGCTTCTGATTATTCTACTTTTAGGAAGTTTGCTGTTACTTCGCAAGCTTCGAAGAAGAACAGCACCTTACCAGAAAAAAGGCGGTTCTCTGCAAATCAGCACCAAGCGCTCTTCTGGCTACTCGATTGGCAAGGGGGATGAAGGCATGGCCTACTATTTATCTCTCTCCGAGCTGGAAGAAGCGACGAATAACTTCTCTAAGAAAATTGGTAAAGGCAGCTTTGGATCAGTCTTTTATGGGAAGATGATTGACGGCAAAGAAGTGGCAGTTAAGATCATGGCCGAGTCATCTACACATGGGAATCAGCAATTTATGACTGAGGTTGCCCTCTTATCAAGAATTCATCACCGAAATTTGGTCCCTTTGATCGGGTACTGCGAAGAAGAACATCAACGGATCCTCGTTTACGAATATATGCATAATGGAACATTGCGAGATCACTTATATGGTTCTACGACTCAAAAGCACTTGGATTGGCTGGCTCGGCTGCACATTGCAGAAGATGCAGCTAAAGGGCTTGAGTATTTGCACACGGGATGCAGCCCGAGTATCATTCATCGAGATGTAAAAACTAGCAACATACTCCTCGACATCAATATGAGGGCAAAGGTTTCCGACTTTGGACTCTCGAGGCAAGCCGAGGAAGATTTGACCCATGTATCAAGCGTTGCTCGAGGAACCGTAGGCTACTTGGATCCTGAGTACTATGCTTGTCAACAACTTACCGAAAAGAGCGATGTCTATAGTTTTGGGGTCGTGCTGCTCGAACTGATCTCTGGGAAGAAACCAGTCTCACCAGAAGACTATGGCAATGAATTGAACATTGTTCACTGGGCAAGGTCCCTGGTCCATAAAGGGGATGTGACAAGCATCGTAGATCCATTTTTAGAAGGAAAAGTCAAAATAGAATCGGTGTGGAGAATCGCTGAAGTTGCCATACAGTGTGTGCAGCAGCATGGAGTTTCCAGGCCAAGGATGCAGGAAGTCATCTTGGCCATACAAGATGCAATCAAGATCGAACAAGGTACTGAAGGAAACCAAAAGCTATCTTCAGGCAGTTTAAAAGCACAATCATCTCGAAAAACTTTGCTGACCACCTTTCTTGAAATCGAGAGCCCCGATGGTTCCCTCCTTCCCTCTGCAAGATAA 2769 42.98 MGFPLFWVLILLLVVSSVYCQVKEFISIDCGGTKNFTDPVTGLAWISDAEIMNAGGSSPVENPNGNLMQYQTRRDFPIDDKKYCYTLKTEERRRYLVRATFQYGSLKDEETYPKFQLYLDATKWSTVTIFDASRVYVKEMIVRAPSNSFDVCICCATTGSPFISTLELRPFNLSMYATDFEDNFFLEVAARVNFGALTKDAIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTERISTLNNINVMTREYPPVKVMQTAVLGSKGVLSYRLNLDDFPANARAYAYFAEIEDLGWNETRKFKLEEPNIPDSSNAVVNIAENANGTYTLYEPSYMNVTLSFVLSFSFVKTRDSTRGPLLNALEISRYVEIAAKTDRRDESVVNVFRNVSAENVWSHEGDPCVPTSWEWVTCSATQPPRITKIELSRKNVKGEIPPEINTMDGLMELWLDGNSLAGPLPDMSNLISLKILHLENNKLTGTLPSYLGSLPNLQELYIQNNTFSGEIPSELLAKKLIFKYDGNVGLHKSERYKMHSKLIVGVSLGVLVLLIILLLGSLLLLRKLRRRTAPYQKKGGSLQISTKRSSGYSIGKGDEGMAYYLSLSELEEATNNFSKKIGKGSFGSVFYGKMIDGKEVAVKIMAESSTHGNQQFMTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMHNGTLRDHLYGSTTQKHLDWLARLHIAEDAAKGLEYLHTGCSPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYACQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGNELNIVHWARSLVHKGDVTSIVDPFLEGKVKIESVWRIAEVAIQCVQQHGVSRPRMQEVILAIQDAIKIEQGTEGNQKLSSGSLKAQSSRKTLLTTFLEIESPDGSLLPSAR 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36430439 36435124 - CcPI632755_05g028860.1 Cco05g2886 180514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2886 922 SUPERFAMILY L domain-like 389 503 - -
Cco05g2886 922 SMART serkin_6 603 877 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2886 922 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 679 886 - -
Cco05g2886 922 Pfam Leucine Rich repeats (2 copies) 460 496 IPR025875 -
Cco05g2886 922 Gene3D Ribonuclease Inhibitor 373 511 IPR032675 -
Cco05g2886 922 ProSiteProfiles Protein kinase domain profile. 603 877 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2886 922 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 407 505 - -
Cco05g2886 922 Pfam Protein tyrosine and serine/threonine kinase 605 870 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2886 922 Gene3D Phosphorylase Kinase; domain 1 582 678 - -
Cco05g2886 922 PANTHER OS07G0107800 PROTEIN-RELATED 455 879 - -
Cco05g2886 922 FunFam receptor-like serine/threonine-protein kinase NCRK 582 678 - -
Cco05g2886 922 Pfam Malectin-like domain 28 360 IPR024788 -
Cco05g2886 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 724 736 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2886 922 Gene3D Transferase(Phosphotransferase) domain 1 679 896 - -
Cco05g2886 922 SUPERFAMILY Protein kinase-like (PK-like) 587 870 IPR011009 -
Cco05g2886 922 ProSitePatterns Protein kinases ATP-binding region signature. 609 631 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1698 Cco-Chr5:24937620 Cco05g2886 Cco-Chr5:36430439 7.80E-67 dispersed
Cco05g2886 Cco-Chr5:36430439 Cco10g2052 Cco-Chr10:33903821 8.60E-244 dispersed
Cco11g0512 Cco-Chr11:5388359 Cco05g2886 Cco-Chr5:36430439 4.50E-59 dispersed
Cco11g0765 Cco-Chr11:8620899 Cco05g2886 Cco-Chr5:36430439 4.20E-65 dispersed
Cco06g0608 Cco-Chr6:6626869 Cco05g2886 Cco-Chr5:36430439 1.00E-40 transposed
Cco07g0431 Cco-Chr7:4856256 Cco05g2886 Cco-Chr5:36430439 7.10E-61 transposed
Cco08g0337 Cco-Chr8:6629201 Cco05g2886 Cco-Chr5:36430439 5.50E-63 transposed
Cco02g0876 Cco-Chr2:10462344 Cco05g2886 Cco-Chr5:36430439 9.60E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86887 PF12819 Malectin_like 4.30E-86 CL0202 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2886 - - - 0.0