Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2887 ATGGAGGAATTCGGTCGGAAAGAAACAAAACTGCTGATCTTAGAGTTCGTTAAAAGACAGACGATGGCTGTTGCTGGTCAAGAACCAGTACCCACTTTCCGGTGGAATGACGTGGCGAGATGTGGGACAAAGCCTTTCTACAAATACATTTCATCTTTTCTCGTCTTTCTTTATCATTTCTTCTTCTGTTCTGTCAAATTCAAAGGAAAAAGAATGTGGCCAGAACAACCCAAAAGGAATTCATTTAAAGAATCTCTTAAAGCTGTTGAAGCTGATATAAGACATGCAAATACACTGGCAGCTATGCTCCCGAGAGATTACGGTGGGTTTTGCATTCAAATGAGATTGCATTACAGCCCATTTGCTCCATTTCTTCTTCATTGGATTGAATGGATGGATATGGATTTCAATTGCACAGATCCTCTTCCAAGTTTCTTGGGCCTTTTCCACATACTCTTGTACAAGGTGTACGTCGATGGAAAACCATTGGTGTCGGCAAGAGAAAGAAAAGCCACCCTCAAGGAGTTCTATGCTGTAATATACCCTTCACTTAGGCAACTTCAAAGTGGGCGTGTAGAGTCAAAAGAAGAGACTTCGTCCAGGAAGATAATAGAAGATGAACAAAAGCTGTCTAATGAAGATCTTCAAAGGGATGAAGAATGTGGGATATGCATGGAGAACCGCAGAGATGTTGTCTTGCCAAATTGTGGTCATTCGATGTGCCTCAGCTGCTTTCAGGACTGGAGTGCGAGATCACGTTCCTGCCCTTTCTGCCGTAACTGTCTAAACAGGTTGAGCACCAGGGATCTGTGGATTCTTACAAGCGACACCGAAATCGTCGACTCAGAAACTCTAGCCAAGGAAAATCTGTTACATTTCTACCTTTATACCGAAAACCTCCCATTGTTTCAACCAGACACGAATGTTTTCATACCAGATTATATGTTGTGA 951 42.27 MEEFGRKETKLLILEFVKRQTMAVAGQEPVPTFRWNDVARCGTKPFYKYISSFLVFLYHFFFCSVKFKGKRMWPEQPKRNSFKESLKAVEADIRHANTLAAMLPRDYGGFCIQMRLHYSPFAPFLLHWIEWMDMDFNCTDPLPSFLGLFHILLYKVYVDGKPLVSARERKATLKEFYAVIYPSLRQLQSGRVESKEETSSRKIIEDEQKLSNEDLQRDEECGICMENRRDVVLPNCGHSMCLSCFQDWSARSRSCPFCRNCLNRLSTRDLWILTSDTEIVDSETLAKENLLHFYLYTENLPLFQPDTNVFIPDYML 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36436894 36438911 + CcPI632755_05g028870.1 Cco05g2887 180515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2887 316 ProSiteProfiles Zinc finger RING-type profile. 221 259 IPR001841 -
Cco05g2887 316 PANTHER RING FINGER PROTEIN 41, 151 79 310 - GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cco05g2887 316 SMART ring_2 221 258 IPR001841 -
Cco05g2887 316 CDD RING-HC_RNF141 219 259 IPR043400 -
Cco05g2887 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 268 IPR013083 -
Cco05g2887 316 SUPERFAMILY RING/U-box 209 264 - -
Cco05g2887 316 Pfam Zinc finger, C3HC4 type (RING finger) 218 261 - -
Cco05g2887 316 ProSiteProfiles DHHC domain profile. 239 272 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2887 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2887 Cco-Chr5:36436894 Cco08g1919 Cco-Chr8:30161758 3.50E-64 dispersed
Cco05g2885 Cco-Chr5:36423207 Cco05g2887 Cco-Chr5:36436894 3.70E-56 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1118 . . . . . . Bma14g01877 . . . . . . . . . Cpe01g01591 Bhi07g01857 . . . . . . Cla05g02628 Cam05g2819 Cec05g2854 Cco05g2887 Clacu05g2822 Cmu05g2670 Cre05g2787 Cone13ag1107 Cone19ag1095 Cone8ag0715 . Lsi04g00643 . . Cme10g00620 . . . . . . . . . . . Cma04g01807 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008688 0 4 2 1 1 1 0 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34