Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2895 ATGGACATTCCTTCTATAATCGTAAATGCTTTGTTTATTTTTGCATTCTTGATGTGGGTTTTGCTTAACTCGTGTAAACGAGAGGTAGAGAGTGATTCCCTTCAGTCGAGAGACAGAGCATTTCGAGAGTTTAAATCGGTAATCAGCATTACTATATTTTGTAATGCTGTTATTCCATTTTGGAATTCTGGGTTTGTTGCGTATCAGTTCTGGAATCATGGAATCGTTTGTGGGGAATCAGCAATTTCTGCTTTAACGTGGATTTTGGCTGCTGCGATTGCTTTTTACTGGAGAAATGGAATCTATTATCAAGGCAAAAAATGGCCGTTGATTCTAATTGTTTGGTGGGTTTTCTCATGTGTTTATGGGTTATGTTCTTCGATTATTTACCTGCTGACCCACTTGAAATCTATGGAGTTTCCTCATTTTCTTCCAAAAGCTACTATTGTAGATTTTGCTTCATTCACTTTGTCTTTGATTATCTGTTGTACGGCACTGACTGTTAACTATTCCAAGAAACATAATGATCTTGAGAAGTCATTGCTCCAAAACGACAATGATTGTTCTTCTGAAAATAATGGTGGTTTCATCAGTCCTGGATTATGGAGTCGAATTACATTCCAATGGCTGAATCCTCTCTTCAAAAGGGGGAGGAATCAGAAACTTGAATTAGCTCATGTTCCTTGTGTACCTCAACCTGAAACAGCTGAATATGCTTCTTCATTGCTAGAAGAATCACTTCAGAGAAAGAAAGTTGAATCTTCTTCCTTGCCCAAAGCTATAGTTCTAGCCACATGGAAATTTCTGGTCTTAACTGCAATTTTTGCAGGATTCAACACATTCGCATCCTTTATGGGGCCTTTCCTAATCACCAACTTTGTGAATTATCTGTTGGGAAAAACTGATGACTCAAGCAACCGTGATGGGTTGATTCTTGCATTCTTCTTCTTCTTTGCTAAGACATTGGAGTCTCTTACTCAAAGACAATGGTATTTCGGCACTCACCGTGTCGGTATACAGGTAAGGGCAGCTCTTACAGTGATGATCTACAAGAAATCTATATCTGTTAATGCTGCTGGTCCAAGTAATGGTAAAATCATAAATCTAATAAATGTGGATGTTGAAAGAATTGGAGACTTCTCGTGGTATATTCACAAGATTTGGTTGCTTCCTGTTCAAATAGCTCTAGCCCTTATCATCCTTTACAGGAATCTTGGAGCTGCTCCTTCCATTACTGCTCTTTTAGCCACAATATTTATAATGGTGAGCAACACACCTTTGGCCAATGTTCAAGAAAGTCTACACTCAAAGATAATGGATGCAAAGGACTCTAGAATCAATTTGACATCAGAGACTCTAAAGAACATGAGAGTCTTGAAACTGCATTCTTGGGAACAGACATTTTTGAAGAAGGTCTTGAAACTTCGAGAAGTTGAAAGAAGCTGGTTGAAGAGATACCTCTATACGTGCTCCGTTATAGCATTTCTCTTTTGGGTTTCACCAACTTTAGTTTCAGTAGTTACTTTTGGCGCCTGTGTTATGATGAAAATCCCTCTAACAGCAGGCACAGTTCTATCAGCCATTGCTACTTTTCGTATCCTACAAGAGCCAATTTATAACCTACCAGAGCTAATTTCCATGATCGCTCAAACAAAAGTTTCCCTTGACCGTATACAAGAGTTCATTCGAGAAGAAGACCAAAGGAAGCAGATTTATTATCCTCCTTCCAATGCATCAGACGTCGCGATTGAAATCGAGGTGGGGGAGTATTCGTGGGAAGCTAGTGATCTAAATTTTAAGAAACCAACTATAAAAGTTGCAGAGAAGATGCAAATACCAAAGGGTTACAAGGTTGCAGTCTGTGGATCAGTTGGTTCAGGAAAATCAAGCCTACTTTGTAGTATACTGGGTGAGATCCCACAGGTTTCAGGAACACAAATGAAAGTACATGGAACTAAAGCTTATGTTCCCCAAAGTGCTTGGATCCAATCAGGCACTGTAAGAGAGAATGTGCTGTTTGGGAAAGAGATTGACAAACATTTTTATGAGGATGTGTTAGAAGCCTGTGCTTTGAATCAGGATATCAAGTTGTGGCTGGATGGAGATTGTACTTTGTTGGGAGAGAGGGGGTTGAACTTAAGTGGAGGGCAAAAGCAGAGGATTCAATTGGCAAGGGCAGTCTATAGTGATGCAGATGTTTATTTCCTGGACGATCCTTTTAGTGCTGTGGACGCATGTACCGGAATACATTTGTTCAAGAGATGTCTTTTGCAACTTCTGTCTGGTAAAACTGTGGTATATGCTACTCATCACTTGGAATTCATCGAAGCTGCAGATCTTGTTCTGGAAAGAAAGTATGCAGAATTAATGTCAGACTCAAACGGTGAACTTTCTAGGCACATTGCAGCTCATAGAAGATCATTGAATGGAGTTAAGCCATTCAAAGAAGATAAACCCCATCATAAAAGACCATGTAAGACACATCAGATAGAAGCTCTAGATGAAAATTTTTCACTATCCCTTGGGAATGTTGGCCACTCTGTAAGAACTCAAGAAGAGGAAACTCAAACCGGTCGTGTAAAGTGGAGTGTCTACTCAAGCTTCATCACATCTGCTTATAAAGGAGCTCTTGTTCCTGTAATCCTTCTATGTCAAGTATTGTTTCAAATCCTTCAGATGGGCAGTAATTACTGGATTTCTTGGGCAACAGAAGTAGAAGGCAAGGTCAGCAGAGAGCAGTTGTTAGGGATCTTCGTTTTGATGTCCGGTGGGAGCTCCATCTTTATATTAGGCCGGGCCGTTTTGATGGCAACCATTGCTATTGAGACTGCACAAAGAATGTTTCTCGGAATGGTGACATCAATATTTGCAGCACCTATTTCATTTTTTGATGCCAAACCTTCAAGCCAAATCCTTAACAGGTCTTCTACTGATCAAGGCACCTTGGATACAGATATCCCTTACAGATTAGGAGGATTGGCTTTTGCACTCATTCAGTTGTTGAGTATCATCATCCTGATGTCCAAGGTTGCATGGCAAGTTTTCCCCCTCTTCCTTGTCGTCCTTGCTATCTCTACATGGTATCAGGGATATTACATCAGTACTGCTAGAGAACTAGCTAGAATGGTCGGGATTCGGAAGGCTCCAATTCTTCATCACTTTTCTGAAACAGTCGTAGGTGCAACAATTATCCGTTGTTTCAATCAAGAGGACCGTTTCTTGACAAAAATACTGAAGCTGGTTGATGATTATTCTCGTGTGGTTTTTCATAACTCAACTTCAATGGAATGGTTGTGCCTGCGGATCAATTTTCTTTTCGATGTTGTCTTCTTTCTCGCCCTTACCATCTTAGTGACCCTTCCTAGAACGGCAATTGATCCAAGCTTAGCAGGATTAGCAGCTACATATGGTTTGAACATGAATGTGCTTCAGGCTTGGGTAATATGGAATTTATGCAATGTGGAGAACAAAATGATATCTGTTGAGAGGATTCTTCAGTTTACTAACATTGCTTCTGAGGCGCCACCGGTTATCGAAGATTGTAGGCCAGTGCCAGAATGGCCAAAGGAGGGAAAGATAGAACTTGAGAACCTTCATGTCCAATACCGTCCTAATCTTCCAGTGGTTCTCAAAGGGATCACTTGTACCTTCCCAAAAAAGAAGAAAATTGGAGTTGTTGGCAGGACAGGAAGTGGAAAATCCACCTTAATCCAAGCACTTTTTAGAGTGGTAGAGCCTTCTGCAGGAAGGATTCTCATTGATGGAGTTGACATTTGCAAAATTGGTCTACATGATCTGAGGTCCAAGTTGGGTATTATTCCACAAGACCCAACATTGTTCCAAGGAACCATGAGAACTAACCTAGACCCTTTGCAGCAACATACTGATCCAGAAATATGGGAGGTCCTTCACAAGTGTCGTTTTGCCGAGATCATCCGAACGGACCACGCGGTTCTTGAAGCACCAGTGGCTGAAGATGGAGAGAATTGGAGTGTGGGACAACGGCAACTTGTTTGTCTGGCCAGAGTGCTCCTCAAAAAACGTAGGATTCTTGTGTTGGATGAGGCAACAGCTTCCATTGATACTGCAACAGAAAATATAATTCAGGAAACAATAAGAGAGGAGACTAATGGTTGTACCGTCATTACTGTGGCTCATCGAATACCAACAATTATCGATAACGATTTGGTTTTGGTTCTTGATGAAGGCAAGGTAATCGAGTACGATTCACCATCTCGACTACTCGAGAACAGTTCTTCTATGTTTTCAAAGTTGGTGACGGAATTCTTGAGTAGATCATCCAATAGTCACTCGCAATCTATGGGGACTTTTGTCAATACCGACGCAAACTGA 4353 40.82 MDIPSIIVNALFIFAFLMWVLLNSCKREVESDSLQSRDRAFREFKSVISITIFCNAVIPFWNSGFVAYQFWNHGIVCGESAISALTWILAAAIAFYWRNGIYYQGKKWPLILIVWWVFSCVYGLCSSIIYLLTHLKSMEFPHFLPKATIVDFASFTLSLIICCTALTVNYSKKHNDLEKSLLQNDNDCSSENNGGFISPGLWSRITFQWLNPLFKRGRNQKLELAHVPCVPQPETAEYASSLLEESLQRKKVESSSLPKAIVLATWKFLVLTAIFAGFNTFASFMGPFLITNFVNYLLGKTDDSSNRDGLILAFFFFFAKTLESLTQRQWYFGTHRVGIQVRAALTVMIYKKSISVNAAGPSNGKIINLINVDVERIGDFSWYIHKIWLLPVQIALALIILYRNLGAAPSITALLATIFIMVSNTPLANVQESLHSKIMDAKDSRINLTSETLKNMRVLKLHSWEQTFLKKVLKLREVERSWLKRYLYTCSVIAFLFWVSPTLVSVVTFGACVMMKIPLTAGTVLSAIATFRILQEPIYNLPELISMIAQTKVSLDRIQEFIREEDQRKQIYYPPSNASDVAIEIEVGEYSWEASDLNFKKPTIKVAEKMQIPKGYKVAVCGSVGSGKSSLLCSILGEIPQVSGTQMKVHGTKAYVPQSAWIQSGTVRENVLFGKEIDKHFYEDVLEACALNQDIKLWLDGDCTLLGERGLNLSGGQKQRIQLARAVYSDADVYFLDDPFSAVDACTGIHLFKRCLLQLLSGKTVVYATHHLEFIEAADLVLERKYAELMSDSNGELSRHIAAHRRSLNGVKPFKEDKPHHKRPCKTHQIEALDENFSLSLGNVGHSVRTQEEETQTGRVKWSVYSSFITSAYKGALVPVILLCQVLFQILQMGSNYWISWATEVEGKVSREQLLGIFVLMSGGSSIFILGRAVLMATIAIETAQRMFLGMVTSIFAAPISFFDAKPSSQILNRSSTDQGTLDTDIPYRLGGLAFALIQLLSIIILMSKVAWQVFPLFLVVLAISTWYQGYYISTARELARMVGIRKAPILHHFSETVVGATIIRCFNQEDRFLTKILKLVDDYSRVVFHNSTSMEWLCLRINFLFDVVFFLALTILVTLPRTAIDPSLAGLAATYGLNMNVLQAWVIWNLCNVENKMISVERILQFTNIASEAPPVIEDCRPVPEWPKEGKIELENLHVQYRPNLPVVLKGITCTFPKKKKIGVVGRTGSGKSTLIQALFRVVEPSAGRILIDGVDICKIGLHDLRSKLGIIPQDPTLFQGTMRTNLDPLQQHTDPEIWEVLHKCRFAEIIRTDHAVLEAPVAEDGENWSVGQRQLVCLARVLLKKRRILVLDEATASIDTATENIIQETIREETNGCTVITVAHRIPTIIDNDLVLVLDEGKVIEYDSPSRLLENSSSMFSKLVTEFLSRSSNSHSQSMGTFVNTDAN 1450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36499178 36505166 + CcPI632755_05g028950.1 Cco05g2895 180523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2895 1450 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 270 550 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cco05g2895 1450 CDD ABC_6TM_ABCC_D2 878 1168 IPR044726 GO:0140359(InterPro)
Cco05g2895 1450 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1193 1427 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g2895 1450 SUPERFAMILY ABC transporter transmembrane region 265 566 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cco05g2895 1450 CDD ABCC_MRP_domain1 583 782 - -
Cco05g2895 1450 FunFam ABC transporter C family member 10 253 566 - -
Cco05g2895 1450 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 880 1156 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cco05g2895 1450 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 585 811 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g2895 1450 CDD ABCC_MRP_domain2 1191 1411 - -
Cco05g2895 1450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1184 1422 IPR027417 -
Cco05g2895 1450 CDD ABC_6TM_ABCC_D1 271 558 IPR044746 GO:0140359(InterPro)
Cco05g2895 1450 Gene3D - 1177 1429 IPR027417 -
Cco05g2895 1450 FunFam ABC transporter C family member 3 1176 1428 - -
Cco05g2895 1450 ProSitePatterns ABC transporters family signature. 713 727 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g2895 1450 SUPERFAMILY ABC transporter transmembrane region 878 1175 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cco05g2895 1450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 782 IPR027417 -
Cco05g2895 1450 SMART AAA_5 614 788 IPR003593 GO:0016887(InterPro)
Cco05g2895 1450 SMART AAA_5 1219 1410 IPR003593 GO:0016887(InterPro)
Cco05g2895 1450 Pfam ABC transporter transmembrane region 270 537 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cco05g2895 1450 Pfam ABC transporter transmembrane region 881 1120 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cco05g2895 1450 Pfam ABC transporter 610 740 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g2895 1450 FunFam Multidrug resistance-associated protein 4 568 829 - -
Cco05g2895 1450 Gene3D - 565 813 IPR027417 -
Cco05g2895 1450 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 198 1426 IPR050173 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cco05g2895 1450 Gene3D ABC transporter type 1, transmembrane domain 244 564 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cco05g2895 1450 Gene3D ABC transporter type 1, transmembrane domain 844 1174 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cco05g2895 1450 Pfam ABC transporter 1210 1358 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g2895 1450 FunFam ABC transporter C family member 5 843 1174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2895 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2895 Cco-Chr5:36499178 Cco09g2305 Cco-Chr9:37289903 0.00E+00 dispersed
Cco05g2895 Cco-Chr5:36499178 Cco10g1060 Cco-Chr10:22739516 7.90E-260 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1141 . . . . . . . . Cmo04g01910 Cmo18g00707 . Cma18g00720 . Car18g00666 . Cpe09g00569 Cpe01g01598 Bhi07g01868 . . Lac13g0089 Hepe10g1543 . . Cla05g02633 . Cec05g2863 Cco05g2895 Clacu05g2831 Cmu05g2678 . . . . . Lsi04g00654 . . Cme10g00632 Blo06g00821 Blo11g00984 . . . . . . . . . Cma04g01814 . Car04g01826 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006115 0 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 2 1 1 1 1 1 2 3 1 38