Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2896 ATGGTCCATCCTCCTCGGAACCGGAGCACAAAATTCTCTGAAACCTACTCTCCTCCCTTGCCGTCGCCGACAATTCGCTTCGAAGAGTCGAAGTTGTTTCTATCGGTTAGAAAAACCCTAGTTTCTGAATTCGTGCACCGACTTCCACAGGTGGGTAGCAGCGAGGATGAGGTTTTTCAGTGTCTTTTGCACGATCCAGTGTGTAACAGAATACAGTTCTCCCATGAAATTGTTTACAAGCTGCTCCAACGATTCAAAGATGATTGGAAATCTGCTTTGGGTGTCTTTAGATGGGCAGAGTCACTCTCTGGATTCAAGCACACACCAGATTTATATGACATTTTAATAGATACATTGGGCAAAACAAAGCAGATGGCCAAGATGAAAAGTATGCTAGAAGAAATGAAGGAAGCTCGCCTTGTGACACTTGATACTGTAGCTAAGGCTATGCGAAGGTTTGCTGGTGCTGGACAATGGAAAGATGCTGTTAGGATATTTGATGATTTGGAAACTTTTGGGTTGGAGAAGAACACTGAATCTATGAATGTGTTGCTTGATACTCTGTGCAAAGAGAAGAAGGTCGAGCAAGCTCGACAGATATATTTGGAACTCAAATCACATATTCCCCCGAATGCCAACACATTTAACATGTTCATTCATGGTTGGTGTAAAGTTGATAGGGTTGATGAGGCACATTGGACATTACAAGAGATGAAAGGGCATGGTTATCGTCCTTGTGTTATTAGTTATTCGACCATTATTCTATTTTATTGTCATCATTATAACTTTAGTAAGGTTTATGAGTTGCTTGATGAAATGGATGCTCAAGGATGCCCAGCAAATGTCATCACGTACACCACCATCATATGCTCACTAACAAAGTCGGACGAATTCGAGGAAGCCTTGCAAATTGCTGAGAGAATGAAATCTGCTGGATGTGAACTCGATACAGTTTTTTATAATTGTTTGATCCATACATTAGGGAGAGCGGGTAAAGTACGGGAAGCTATTCATGTATTCAAAGTAGAAATGCCAAGCAAGCGTGTTTTACCAAATACATCAACCTACAATTCTATGATTTCCATGTACTGTCATCGTGCGCAAGAACGAAAGGCTATGAAACTGCTTGAGGAGATGGAGAAATCAGGGCTTTGTAAACCTGATGTCCAGACATATTACCCATTGCTTAAATCCTGTTTTAGAACTGGAAAGACAGACTATGTTCTGAGCAAGTTATTGGATGAGATGATAAATAAACATCATCTGAGCCTTGATATATCAACCTATTCCCTTCTAATTCATGGTCTTTGTAGAGCAAATAAGTGTGAGTGGGCTTACCAGTTATTTGAGAAGATGATTAGTCAAGATATAAAGCCGAGATACCTCACATGTCAACTGCTTTTGGATGAAGTTAAGCAGAAGAATATGGGTGAAGTTGCTGATAGGATTGAAGATATCAGGAAGAACTTGTGA 1473 40.39 MVHPPRNRSTKFSETYSPPLPSPTIRFEESKLFLSVRKTLVSEFVHRLPQVGSSEDEVFQCLLHDPVCNRIQFSHEIVYKLLQRFKDDWKSALGVFRWAESLSGFKHTPDLYDILIDTLGKTKQMAKMKSMLEEMKEARLVTLDTVAKAMRRFAGAGQWKDAVRIFDDLETFGLEKNTESMNVLLDTLCKEKKVEQARQIYLELKSHIPPNANTFNMFIHGWCKVDRVDEAHWTLQEMKGHGYRPCVISYSTIILFYCHHYNFSKVYELLDEMDAQGCPANVITYTTIICSLTKSDEFEEALQIAERMKSAGCELDTVFYNCLIHTLGRAGKVREAIHVFKVEMPSKRVLPNTSTYNSMISMYCHRAQERKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLTCQLLLDEVKQKNMGEVADRIEDIRKNL 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36508394 36510484 + CcPI632755_05g028960.1 Cco05g2896 180524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2896 490 Gene3D Tetratricopeptide repeat domain 70 205 IPR011990 GO:0005515(InterPro)
Cco05g2896 490 Gene3D Tetratricopeptide repeat domain 206 274 IPR011990 GO:0005515(InterPro)
Cco05g2896 490 Gene3D Tetratricopeptide repeat domain 275 343 IPR011990 GO:0005515(InterPro)
Cco05g2896 490 Pfam PPR repeat 422 452 IPR002885 -
Cco05g2896 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Cco05g2896 490 Pfam PPR repeat 112 138 IPR002885 -
Cco05g2896 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 207 IPR002885 -
Cco05g2896 490 Pfam PPR repeat family 316 365 IPR002885 -
Cco05g2896 490 Pfam PPR repeat family 245 293 IPR002885 -
Cco05g2896 490 Pfam PPR repeat family 177 224 IPR002885 -
Cco05g2896 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Cco05g2896 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Cco05g2896 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Cco05g2896 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Cco05g2896 490 Gene3D Tetratricopeptide repeat domain 344 489 IPR011990 GO:0005515(InterPro)
Cco05g2896 490 PANTHER OS03G0856100 PROTEIN 235 470 - -
Cco05g2896 490 Pfam Pentatricopeptide repeat domain 374 416 IPR002885 -
Cco05g2896 490 NCBIfam pentatricopeptide repeat 214 245 IPR002885 -
Cco05g2896 490 NCBIfam pentatricopeptide repeat 319 353 IPR002885 -
Cco05g2896 490 NCBIfam pentatricopeptide repeat 428 459 IPR002885 -
Cco05g2896 490 NCBIfam pentatricopeptide repeat 283 317 IPR002885 -
Cco05g2896 490 NCBIfam pentatricopeptide repeat 248 281 IPR002885 -
Cco05g2896 490 NCBIfam pentatricopeptide repeat 112 141 IPR002885 -
Cco05g2896 490 NCBIfam pentatricopeptide repeat 355 388 IPR002885 -
Cco05g2896 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 351 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2896 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2896 Cco-Chr5:36508394 Cco10g1154 Cco-Chr10:24091718 2.00E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1144 . . . . . Bpe10g00778 . Bma15g00243 . . . . . Car18g00665 Sed06g0134 Cpe09g00570 . Bhi07g01872 Tan04g0097 Cmetu10g0012 Lac13g0085 Hepe10g1542 . . Cla05g02634 Cam05g2827 . Cco05g2896 Clacu05g2832 Cmu05g2679 Cre05g2795 . Cone19ag1108 . . Lsi04g00655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011749 1 1 0 2 1 0 2 1 1 1 1 1 1 0 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 30