Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g2898 | ATGGATTCAAATTCAAAGAAATCCAACAAAATCAGAGACATCGTGCGGCTTCAACAGATCCTGAAGAAATGGCGGAAGCTAGCGAACTCGTCGAAGACGGCCAACAAAATCTCCGGCACGGCGGCTGGACCTGCCGGAAAGAGCATAAAGTTTCTCAAACGGACGTTATCGTCGGCCGGTGGGGAAAGCTGCGGCGGCGCAGTACCGAAAGGCTATTTGGCGGTGAGCGTGGGGGAGGAGCAAAAGCGATTTGTGATACCGACGCAGTATTTAGGGCATCCGGCTTTTGAGATTCTGTTAAGAGAAGCGGAGGAGGAGTTCGGATTTCAACAAACGGGGGTTTTGAGGCTGCCGTGTGAAGTAACGGTGTTTGAAAATGTGGTGAAATTGGTGGAGGAAAAGAAGAAAGGGGACTTCTTGTTAGGGGGAGAAGAGGTTTTGAGTTTTTGTTCATTCGAAACGCTGCAGTTAACGCCGTCGCACCGTCCGCAGAGTCCAATGTGCAGATAG | 510 | 50.59 | MDSNSKKSNKIRDIVRLQQILKKWRKLANSSKTANKISGTAAGPAGKSIKFLKRTLSSAGGESCGGAVPKGYLAVSVGEEQKRFVIPTQYLGHPAFEILLREAEEEFGFQQTGVLRLPCEVTVFENVVKLVEEKKKGDFLLGGEEVLSFCSFETLQLTPSHRPQSPMCR | 169 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 36531916 | 36532425 | + | CcPI632755_05g028980.1 | Cco05g2898 | 180526 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g2898 | 169 | Pfam | Auxin responsive protein | 16 | 130 | IPR003676 | GO:0009733(InterPro) | |
| Cco05g2898 | 169 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 17 | 130 | IPR003676 | GO:0009733(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g1992 | Cco-Chr2:32858112 | Cco05g2898 | Cco-Chr5:36531916 | 8.70E-15 | dispersed | |
| Cco04g1227 | Cco-Chr4:27648103 | Cco05g2898 | Cco-Chr5:36531916 | 1.20E-13 | dispersed | |
| Cco05g2898 | Cco-Chr5:36531916 | Cco11g0004 | Cco-Chr11:46916 | 9.20E-19 | dispersed | |
| Cco05g2898 | Cco-Chr5:36531916 | Cco02g0485 | Cco-Chr2:4452922 | 9.20E-19 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g2898 | K14488 | - | csv:101216710 | 289.656 |