Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2898 ATGGATTCAAATTCAAAGAAATCCAACAAAATCAGAGACATCGTGCGGCTTCAACAGATCCTGAAGAAATGGCGGAAGCTAGCGAACTCGTCGAAGACGGCCAACAAAATCTCCGGCACGGCGGCTGGACCTGCCGGAAAGAGCATAAAGTTTCTCAAACGGACGTTATCGTCGGCCGGTGGGGAAAGCTGCGGCGGCGCAGTACCGAAAGGCTATTTGGCGGTGAGCGTGGGGGAGGAGCAAAAGCGATTTGTGATACCGACGCAGTATTTAGGGCATCCGGCTTTTGAGATTCTGTTAAGAGAAGCGGAGGAGGAGTTCGGATTTCAACAAACGGGGGTTTTGAGGCTGCCGTGTGAAGTAACGGTGTTTGAAAATGTGGTGAAATTGGTGGAGGAAAAGAAGAAAGGGGACTTCTTGTTAGGGGGAGAAGAGGTTTTGAGTTTTTGTTCATTCGAAACGCTGCAGTTAACGCCGTCGCACCGTCCGCAGAGTCCAATGTGCAGATAG 510 50.59 MDSNSKKSNKIRDIVRLQQILKKWRKLANSSKTANKISGTAAGPAGKSIKFLKRTLSSAGGESCGGAVPKGYLAVSVGEEQKRFVIPTQYLGHPAFEILLREAEEEFGFQQTGVLRLPCEVTVFENVVKLVEEKKKGDFLLGGEEVLSFCSFETLQLTPSHRPQSPMCR 169
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 36531916 36532425 + CcPI632755_05g028980.1 Cco05g2898 180526
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2898 169 Pfam Auxin responsive protein 16 130 IPR003676 GO:0009733(InterPro)
Cco05g2898 169 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 17 130 IPR003676 GO:0009733(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1992 Cco-Chr2:32858112 Cco05g2898 Cco-Chr5:36531916 8.70E-15 dispersed
Cco04g1227 Cco-Chr4:27648103 Cco05g2898 Cco-Chr5:36531916 1.20E-13 dispersed
Cco05g2898 Cco-Chr5:36531916 Cco11g0004 Cco-Chr11:46916 9.20E-19 dispersed
Cco05g2898 Cco-Chr5:36531916 Cco02g0485 Cco-Chr2:4452922 9.20E-19 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2898 K14488 - csv:101216710 289.656