Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2905 ATGTGGTTACCAAGATACAGCTTAGAAAGAAAGGAGAGATTGAATGTGAATGGATTTGTGGCAGTGGCAATTGATAAAGACAAAGGAAGCCAAGGAGCTCTCAAATGGGCGATTGATCATTTGCTTCAAAGAGGACATACTATTTTCCTCATCCATGTCAAACTCAGATCTCCTTCTAATTCTTCCCAAAAGATGAGTTTGAAATCTGACTCTGAAGCCAGTGTCAAAGAATTATTCCTTCCTTTTCGTTGCTTTTGTACTCGTAAGGATATACAATGCAAAGATGTTGTGTTGGAAGATACAGATGTAGCAAAGGCCATAATTGAGTATGCTGCAAATACAGCCATAGAGAACATTGTCGTGGGTGCTTCAGCAAAATCTGGCTTCTTAAGATTCAAGGCAACTGATGTTCCTGGCAGTGTAGTGAAAGGAGCACCAGATTTTTGTAATGTGTTTGTCATTTCTAAAGGAAAAATCCAATCGATGCGTTCGGCATCTCGTCCTGCTCCACCGGTAACTGCTCTACGAGGTCAATTAGCGCAACAATCCAGTGCAAAATCCGGTATGCCTGACTTCCCTGTCTCTCACTCTGCAAGTGCAAGAGCGTCTTTGGATAAGCCACCACTTGATCTGCCTAGTAAATCGCAAGACGAGGCCGATTTCATGAGGTCCCCATTCACAAGGAAAGGATATAACTACAAAGCATCATATGGAGATTTGTCTATGCAAGATTCAGATATATCTTATGTTAGCTCGGGAAGACCGAGCATTGATCGCATATTTCCTTCACTTTATGACAGTCAAGATATGGGAGGAAGAGCCGCACCACCACAGATTTCAAGCAGTACAGATCTTGACTTGACTCGCAGCTTTGAGTCTCTGCAGTTGGGACGGATGTCGGTGGATATGAACTTTCCGTCTGAGTTCTCTTCGATCTCACAAGATAGTGACAGAATGTCTATCTCATCACAGTCTATGGAAGATGTAGAGGCCGAGATGCGGAGGCTGAAGCTAGAACTCAAGCAAACCATGGAAATGTACAGTACAGCCTGCAAGGAAGCTCTTACAGCAAAACAAAAGGCGGTCGAGCTACAACGCTGGAAACTAGAAGAAGAACAAAGATTAGAAGAGGCAAGATTGGCGGGGGAAGCTGCATTGGCACTAGCCGAACAAGAGAAGGCGAAGTCGAAAGCAGCAATTGAGGCAGCTGAAGCAGCTAGAAGAATTGCAGAATTGGAAGCACAGAAAAGAATGAAGGCTGAAATGAAAGCACTCAAAGAAGCTGAAGAGAAGAAAAAGGCATTTGATGCATTGGCACAAAATGATATCAGGTATAGAAAGTATACAATCGAGGAGATCGAAGAGGCAACAGAGTTCTTTTCCGAATCTCGTAGGATCGGAGAAGGAGGATATGGTCCTGTTTACAAGTGTGATCTTGATCATACTCCTGTTGCCATTAAGGTTCTACGTCCCGATGCGACTCAAGGACGATCTCAGTTTAAACAAGAGGTAGAAGTACTCAGCTGTATACGTCATCCAAACATGGTTCTCCTCCTTGGAGCTTGCCCCGAGTACGGCTGCTTGGTCTATGAGTTCATGGCTAATGGGAGCTTAGAAGACCGACTTCTGCGACGAGGAAACACGCCTCCACTTTCATGGCAACTTAGGTTTAAAATTGCAGCTGAAATTGGAACAGCATTGTTGTTCTTGCACCAAACAAAGCCAGAGCCTCTTGTGCATCGCGATCTCAAACCAGCTAACATTCTGCTCGATCGTAACTTTGTCAGTAAGATTAGTGATGTTGGCTTGGCTAGGCTTGTACCACCATCCATTGCTGATAGCGTAACACAATATCGAATGACATCAACTGCTGGAACATTTTGCTACATTGATCCAGAGTATCAACAAACAGGTATGCTTGGTGTGAAATCCGACATATACTCGCTAGGCATCATGTTTCTCCAACTTATAACTTCTAGGCCGCCAATGGGATTAACTCACCATGTCGAAAGAGCTATCGAGAAGGGATCGTTCGAAAATATTCTCGATCCAGCTGTCCCTGATTGGCCTATTGAAGAAGCTTTGTCTTTCGCCAAGTTGTCGCTCAAGTGCGCCGAGTTAAGACGTAAAGATAGGCCAGATCTTGGGAAGGTCATCCTTCCAGAGCTTAACAGGTTGAGAATTATTGCAGAAGAAACAATGCATCCAACACTGATGGGAGATATAAGCCCTTCTCGCAGCAGCAGTCAAGTTTCTTTTCAATTGGGAGCAATGGCTTCATCTCCGCAATCATACAACAGCTCGAGAAATCCATCGGCTAATTTTTGA 2328 44.07 MWLPRYSLERKERLNVNGFVAVAIDKDKGSQGALKWAIDHLLQRGHTIFLIHVKLRSPSNSSQKMSLKSDSEASVKELFLPFRCFCTRKDIQCKDVVLEDTDVAKAIIEYAANTAIENIVVGASAKSGFLRFKATDVPGSVVKGAPDFCNVFVISKGKIQSMRSASRPAPPVTALRGQLAQQSSAKSGMPDFPVSHSASARASLDKPPLDLPSKSQDEADFMRSPFTRKGYNYKASYGDLSMQDSDISYVSSGRPSIDRIFPSLYDSQDMGGRAAPPQISSSTDLDLTRSFESLQLGRMSVDMNFPSEFSSISQDSDRMSISSQSMEDVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAVELQRWKLEEEQRLEEARLAGEAALALAEQEKAKSKAAIEAAEAARRIAELEAQKRMKAEMKALKEAEEKKKAFDALAQNDIRYRKYTIEEIEEATEFFSESRRIGEGGYGPVYKCDLDHTPVAIKVLRPDATQGRSQFKQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLEDRLLRRGNTPPLSWQLRFKIAAEIGTALLFLHQTKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSIADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITSRPPMGLTHHVERAIEKGSFENILDPAVPDWPIEEALSFAKLSLKCAELRRKDRPDLGKVILPELNRLRIIAEETMHPTLMGDISPSRSSSQVSFQLGAMASSPQSYNSSRNPSANF 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36584538 36589090 + CcPI632755_05g029050.1 Cco05g2905 180533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2905 775 PANTHER OS02G0152300 PROTEIN 20 745 IPR051348 -
Cco05g2905 775 ProSiteProfiles Protein kinase domain profile. 460 738 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2905 775 Coils Coil 352 372 - -
Cco05g2905 775 Pfam Universal stress protein family 20 146 IPR006016 -
Cco05g2905 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g2905 775 SUPERFAMILY Protein kinase-like (PK-like) 443 718 IPR011009 -
Cco05g2905 775 Pfam Protein kinase domain 461 714 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2905 775 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 154 - -
Cco05g2905 775 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 432 532 - -
Cco05g2905 775 FunFam U-box domain-containing protein 51 533 733 - -
Cco05g2905 775 CDD STK_N 20 157 - -
Cco05g2905 775 SMART serkin_6 460 729 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g2905 775 Gene3D HUPs 20 154 IPR014729 -
Cco05g2905 775 Coils Coil 319 346 - -
Cco05g2905 775 Gene3D Phosphorylase Kinase; domain 1 438 532 - -
Cco05g2905 775 Gene3D Transferase(Phosphotransferase) domain 1 533 736 - -
Cco05g2905 775 Coils Coil 386 438 - -
Cco05g2905 775 MobiDBLite consensus disorder prediction 185 217 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0480 Cco-Chr2:4357930 Cco05g2905 Cco-Chr5:36584538 1.10E-242 dispersed
Cco05g2905 Cco-Chr5:36584538 Cco11g1155 Cco-Chr11:22585727 3.60E-219 dispersed
Cco05g2905 Cco-Chr5:36584538 Cco08g1414 Cco-Chr8:26072767 5.80E-294 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86889 PF00069 Pkinase 5.20E-39 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2905 - - - 0.0