Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2908 ATGGCGCCGGGATTCGGGTTTTTATGTCGGTGGGGTAAAGAGAAAGACTCTCAAAAGGGAACTCCGGTGGTTGTGACAATGGAGAAACCTAATTTCTCCGTCGTGGAGATCGACGGTCCCGACGCTGCATTCCGGCCGGTGGAGAAAAGTAGAGGCAAAAATGCTAAACAGGTCACGTGGGTTCTTCTTCTGAAGGCCAATCGAGCCGTCGGTTGCATAACTTGGCTTGTAACTGTTCTCTGGGCATTGTTGGGAACAATCAAGAAGAGGCTGATCTACAGGCAAGGAGTCGCCATTGAAGGGGGGAAGTTGGGAAGAGGGAAGTTATTGTTTGGAGTTATTAGAGTTTTCTTAGTAGCTTCCATTGCGATTCTTGCTTTTGAAATGCTTGCTTATTTCAAAGGCTGGCATTATTTTCAGAATTCCAATCTGCATATTCCTCAAGCTTCTGAGTTGCAAGGATTGCTTCATTCACTCTATGTTGCTTGGTTAACTTTTAGAGCAGAGTACATTGCACCCCTCATCCAGACACTCTCTAAATTTTGCATTGTTCTGTTCCTTATCCAATCTGTGGATCGTATGATCCTTTGTCTTGGTTGCCTGTGGATAAAGTACAAAAGAATTGAGCCCAAGATTGAAGGGGATCCCTTCAAGTTGGATGATGAGGAGGGAGCTGGGCACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAACGAGCGTGAGGTTTATGAGCAGTCTATCTCTGCAGTCTGTCAGATTGATTGGCCAAGGGGCCATTTACTAATTCAAGTTCTTGATGATTCTGATGATGAGAGCATCCAACTGCTAATTAAGGCAGAGGTCGCTAAATGGAGCCAAAAGGGGGTAAACATAGTGTATCGCCATCGATTAGCAAGGACAGGATATAAAGCTGGGAATCTCAAGTCTGCAATGAGTTGTGATTATGTTAGAGACTATGAGTTTGTAGCAATTTTTGATGCTGACTTTCAACCTAATCCAGATTTTCTTAAATTGACCATTCCCCATTTCAAGGATAACCCGGAGCTAGGTTTGGTTCAGGCCAGATGGTCTTTTGTGAACCGGGATGAAAATTTGTTGACACGCCTTCAAAATATTAACTTGTGTTTCCACTTTGAGGTAGAACAGCAGGTTAATGGGGTGTTCCTTAATTTCTTTGGTTTCAATGGCACTGCTGGTGTTTGGAGGATTAAAGCCCTGGAGGAGTCTGGAGGGTGGCTTGAAAGAACCACAGTAGAGGATATGGACATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTTGTATTTCTAAACGACGTTAAGGTCCTTTGTGAGGTTCCTGAGTCCTATGAAGCTTATAGGAAGCAGCAACATCGTTGGCATTCTGGTCCTATGCAACTATTCAGGTTGTGTCTTCCAGCAGTCATAAGTTCTAAGATATCAACATGGAAGAAGGCAAATTTGATACTGTTGTTCTTTCTGTTAAGGAAGCTTATCCTTCCATTCTATTCCTTCACTTTGTTCTGCATAATTCTTCCTCTAACCATGTTTGTTCCAGAAGCCGAGCTTCCTGTATGGGTGATCTGTTATGTGCCTGTCTTCATGTCATTACTAAACATTCTTCCATCCCCAAAATCTTTTCCTTTTATTGTCCCTTACCTTCTTTTTGAGAACACTATGTCTGTCACCAAATTCAACGCCATGGTATCTGGCTTATTCCAGTTAGGTAGCTCTTATGAGTGGATTGTGACCAAAAAGGCTGGCAGGTCCTCCGAATCCGACTTACTGGCTGCTGCTGAAAGGGACTCTAAGACAATGAATCAAGTGTCGATCTGTAGAGGTGCGTCAGAGAGTGAGATTTCTGAGTTGGCTCACTTAAAGGAACGCAAAGAAGTTGTCTCTGCGCCTGTCAAAAAAGTTAACAAGATATATCGGAAAGAGCTAGCACTCGCGTTTCTTTTACTGTTAGCCTCACTCAGGAGTCTCTTGGCTGCACAAGGAGTCCACTTCTACTTCTTGATGTTCCAAGGTGTGACCTTCCTTCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTGA 2088 43.63 MAPGFGFLCRWGKEKDSQKGTPVVVTMEKPNFSVVEIDGPDAAFRPVEKSRGKNAKQVTWVLLLKANRAVGCITWLVTVLWALLGTIKKRLIYRQGVAIEGGKLGRGKLLFGVIRVFLVASIAILAFEMLAYFKGWHYFQNSNLHIPQASELQGLLHSLYVAWLTFRAEYIAPLIQTLSKFCIVLFLIQSVDRMILCLGCLWIKYKRIEPKIEGDPFKLDDEEGAGHKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRGHLLIQVLDDSDDESIQLLIKAEVAKWSQKGVNIVYRHRLARTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTIPHFKDNPELGLVQARWSFVNRDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAVISSKISTWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVWVICYVPVFMSLLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERDSKTMNQVSICRGASESEISELAHLKERKEVVSAPVKKVNKIYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36626146 36628954 + CcPI632755_05g029080.1 Cco05g2908 180536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2908 695 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 221 449 IPR029044 -
Cco05g2908 695 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 151 694 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Cco05g2908 695 FunFam probable xyloglucan glycosyltransferase 5 223 448 - -
Cco05g2908 695 Pfam Glycosyl transferase family group 2 324 535 IPR001173 -
Cco05g2908 695 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 531 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2908 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1182 Cco-Chr4:27255415 Cco05g2908 Cco-Chr5:36626146 1.20E-112 dispersed
Cco05g2908 Cco-Chr5:36626146 Cco09g2084 Cco-Chr9:35250693 5.60E-272 dispersed
Cco05g2908 Cco-Chr5:36626146 Cco10g1931 Cco-Chr10:32900863 1.50E-112 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g1977 . 260 422 REM Transcription Factor Family AT1G49480 70.6 8.7e-57 217.2
Cco05g2908 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1089.7
Cco09g2084 . 4 666 REM Transcription Factor Family AT2G24630 69.2 4.1e-267 917.5
Cco05g2918 . 1 707 REM Transcription Factor Family AT2G24630 64.1 2.3e-262 901.7
Cco08g1854 . 5 698 REM Transcription Factor Family AT2G24630 66.7 3.4e-261 897.9
Cco09g0832 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cco05g2908 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1089.7
Cco09g2084 . 4 666 REM Transcription Factor Family AT2G24630 69.2 4.1e-267 917.5
Cco05g2918 . 1 707 REM Transcription Factor Family AT2G24630 64.1 2.3e-262 901.7
Cco08g1854 . 5 698 REM Transcription Factor Family AT2G24630 66.7 3.4e-261 897.9
Cco09g0832 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cco05g2908 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1089.7
Cco09g2084 . 4 666 REM Transcription Factor Family AT2G24630 69.2 4.1e-267 917.5
Cco05g2918 . 1 707 REM Transcription Factor Family AT2G24630 64.1 2.3e-262 901.7
Cco08g1854 . 5 698 REM Transcription Factor Family AT2G24630 66.7 3.4e-261 897.9
Cco09g0832 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cco09g1977 . 260 422 REM Transcription Factor Family AT1G49480 70.6 8.7e-57 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38