Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2915 ATGGCGGTCGATCTGATGAGTTTTCCGAAGATGGATGATCAAATGGCTATACAGGAGGCTGCATCGCAAGGATTGAAGAGTATGGAGCATTTGATTCGTCTTCTTTCTCACAAGCAATCCTCAAGCCATGTTGATTGCTCTGATTTAACTGATGCAACCGTTTCCAAGTTCAAGAAAGTGATCTCTCTCCTCAATCGGACCGGTCACGCTAGATTCCGGCGAGGTCCGGTTTCTTCGACATCCTCCTCGTCGTCCGGTTCATCTGCTCATCTCTCTTTTCCTCAAAATCAGGCGATGAATCTCACTCCTACTCCGTTTACTTCACCGGCCGCGGTTCCTGCTCCGCCGTTCACCGCTCCGGCTTCCGTCGCTCAGCCACAGGCGAAAGTCGTCGCTGCGGCGGCGAACATCCTTCAGTCGCAGCCTCAGAGCATGACTCTCGATTTCACTAGGCCGAATATTTTGAACTCAAATCCTAAGGGAACCGATTTGGAATTTTCTAAGGAGACCTTCAGCGTCTCGTCCAGCTCCTCGTTTATGTCCTCAGCCATCACCGGAGACGGAAGCGTATCCAACGGAAAGTTAGGAACGTCGATCTTCTTAGCACCAGCGCCGACTGCTTCCGGTGGTAAGCCGCCGCTCTCGGCGGCGCCTTACAAGAAGAGGTGTCACGAACACGATCATTCCGAAGATTTGTCTGGAAAATTCTCCGGGTCAACATCTGCTTCCGGCAAATGCCATTGCTCAAAGAGAAGAAAAAATCGTACGAAGAAGACGATTCGAGTCCCAGCGATTAGTTCAAAAATCGCAGATATTCCACCGGACGAGTACTCGTGGAGGAAGTATGGTCAGAAGCCGATCAAAGGATCTCCATACCCACGGGGATATTACAAGTGTAGCACGATGAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAACGATCCGGCGATGTTGATTGTAACGTACGAAGGGGAGCACCGCCATACGCAGAGCTCGTTGCCGGAAAATATGGCGGCTGGAGTAGCTTTAGTTTTTGAGTCAACTTGA 1056 51.14 MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLIRLLSHKQSSSHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSSTSSSSSGSSAHLSFPQNQAMNLTPTPFTSPAAVPAPPFTAPASVAQPQAKVVAAAANILQSQPQSMTLDFTRPNILNSNPKGTDLEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDLSGKFSGSTSASGKCHCSKRRKNRTKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMAAGVALVFEST 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36685428 36687065 + CcPI632755_05g029150.1 Cco05g2915 180543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2915 351 Pfam WRKY DNA -binding domain 275 331 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2915 351 Gene3D WRKY domain 246 334 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2915 351 SMART WRKY_cls 273 333 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2915 351 SUPERFAMILY WRKY DNA-binding domain 271 333 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2915 351 MobiDBLite consensus disorder prediction 74 92 - -
Cco05g2915 351 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 334 IPR044810 GO:0003700(InterPro)
Cco05g2915 351 FunFam WRKY transcription factor 65 257 334 - -
Cco05g2915 351 ProSiteProfiles WRKY domain profile. 268 334 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2915 351 MobiDBLite consensus disorder prediction 72 92 - -
Cco05g2915 351 Pfam Plant zinc cluster domain 220 271 IPR018872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1457 Cco-Chr4:30010269 Cco05g2915 Cco-Chr5:36685428 1.70E-52 dispersed
Cco05g2281 Cco-Chr5:31505655 Cco05g2915 Cco-Chr5:36685428 8.80E-57 dispersed
Cco05g2915 Cco-Chr5:36685428 Cco07g0068 Cco-Chr7:661271 1.20E-41 dispersed
Cco06g1572 Cco-Chr6:26313127 Cco05g2915 Cco-Chr5:36685428 2.20E-70 transposed
Cco02g0860 Cco-Chr2:10025138 Cco05g2915 Cco-Chr5:36685428 4.40E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59412 PF03106 WRKY 6.70E-26 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2915 - - - 0.0