Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2918 ATGGCGCCCTCCTTTGATTGGTGGGGAAAAGACACTCATAGAGGAACCCCTGTTGTTGTCAAGATGGAGAATCCTAATTGGTCGATGGTTGAGTTGGAGGGTCCGTCGGAGGATGATTTTCTCATCGCTGGTGAGTCGTCGCCGACGGGTCGGACCAGAGATAAAGGCAGAGGCAAAAACGCTAAGCAACTCACGTGGGTTCTCCTCCTCAAAGCCCACAGGGCCGCTGGTTGTTTAACTTCCATTGGCTCTGCAATGGTGGACCTCGCCGCCGCCGTTAGACGCCGTGTTGCTTCTGGACGGACTGATGAGGACGACGCCGACAATGACGTCACTGTTGGAGGTAGAGAGAAAGAGAACCCGACTGTGAAAACCAGGTTCTATTCTTGTATCAAGGTGTTTCTATGGCTGTCGGTGCTTCTGTTGGGTTTTGAGATTGCGGCCTTCTTCAAGGGCTGGCATTTTGGTACTCCAAATCTTCAATTGGATTACCTTTGGGCATCGCCTTGGGGTTTCAAAGGAGCTTTTGGTTGGATTTACTCTCAGTGGGTATTGATTCGAGTGGACTATTTAGCTCCACCTCTACAGTTCTTAGCCAATGCCTGTATCATACTGTTCATCATTCAGAGCTTGGATCGTTTAATCTTATGTTTGGGTTGTTTCTGGATCCGGTTCAAGAAAATCCAACCAGTTCTTAAACCTGGAGATGAAGACCTTGAATCCGGTGAAAAGGGCTATTTCCCAATGGTTCTTGTTCAGATCCCCATGTGCAATGAAAAAGAGGTTTATCAGCAATCAATTGCTGCTATCTGCAACTTGGACTGGCCAAGAACTAAGCTGCTGATTCAAGTTCTTGATGATTCTGATGATCCAACTACCCAGTTGTTGATTAAAGAGGAGGTTCTTAAATGGCAGCAAGAGGGTGCCAACATTATTTATCGTCATCGGGTCATTAGAGATGGTTATAAGGCTGGCAACCTCAAATCTGCCATGAATTGTAGCTATGTCAAAGATTACGAATTCGTTGCCATTTTCGATGCCGATTTTCAACCCACACCTGATTTCCTTAAAAGAACTGTTCCGCATTTCAAGGACAATGAAGAGCTGGGGCTGGTTCAAGCTAGGTGGTCTTTTGTGAACAGGGATGAGAACTTGCTAACTAGGCTGCAGAACATCAATTTAGCTTTCCATTTTGAAGTAGAGCAGCAAGTGAACAGTGTCTTCCTCAACTTCTTTGGATTCAATGGCACTGCTGGTGTGTGGAGGATCAAAGCTCTCGAGGATGCCGGTGGGTGGTTAGAAAGGACCACCGTCGAGGACATGGATATCGCTGTTCGTGCTCATCTTCATGGATGGAAATTCATATTCCTAAATGATGTTGAGTGCCAGTGTGAGCTACCAGAATCTTATGAAGCTTATAGAAAACAACAACATAGATGGCATTCTGGCCCAATGCAATTGTTTCGCCTTTGTTTGCCTGCTATTATTCGATCAAAGATTAGTGTATGGAAGAAGTTCAACTTGATCTTCCTCTTCTTTTTGCTCAGAAAATTGATACTGCCCTTCTATTCCTTCACACTTTTCTGCATAATTCTACCTATGACAATGTTTGTTCCCGAGGCCGAGCTACCCGCTTGGGTTGTTTGCTATATCCCGGCCACCATGTCATTTCTAAACATCCTGCCTGCCCCAAAATCCTTCCCTTTCATTGTCCCTTACCTCCTTTTTGAGAACACCATGTCAGTCACCAAGTTCAATGCCATGATCTCAGGCCTCTTCCAGCTTGGTAGTGCCTACGAATGGGTTGTTACAAAGAAATCTGGCCGTTCCTCGGAGGGCGATCTCGTCTCCTTGGTAGAGAGAGAGCAAAAGCATCAGAGAGGAGCTTCAGCGCCCGACCTAGAAGAAATGAAGGAAGAAATTCAGAAGCAAGAGAAGAAAGCTTCTTTGCGAAAGAAGCACAACAGAATATACACGAAAGAGCTGGCATTAGCTTTCCTCCTCCTAACCGCATCAGCACGGAGCCTTCTGTCTGCACAAGGGATCCATTTCTACTTCTTGCTATTCCAGGGGATCTCGTTCCTGCTTGTTGGTTTGGACTTGATCGGCGAACAGATAGGTTGA 2124 46.09 MAPSFDWWGKDTHRGTPVVVKMENPNWSMVELEGPSEDDFLIAGESSPTGRTRDKGRGKNAKQLTWVLLLKAHRAAGCLTSIGSAMVDLAAAVRRRVASGRTDEDDADNDVTVGGREKENPTVKTRFYSCIKVFLWLSVLLLGFEIAAFFKGWHFGTPNLQLDYLWASPWGFKGAFGWIYSQWVLIRVDYLAPPLQFLANACIILFIIQSLDRLILCLGCFWIRFKKIQPVLKPGDEDLESGEKGYFPMVLVQIPMCNEKEVYQQSIAAICNLDWPRTKLLIQVLDDSDDPTTQLLIKEEVLKWQQEGANIIYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPTPDFLKRTVPHFKDNEELGLVQARWSFVNRDENLLTRLQNINLAFHFEVEQQVNSVFLNFFGFNGTAGVWRIKALEDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPAIIRSKISVWKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLVEREQKHQRGASAPDLEEMKEEIQKQEKKASLRKKHNRIYTKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQIG 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36712027 36714514 + CcPI632755_05g029180.1 Cco05g2918 180546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2918 707 Coils Coil 634 654 - -
Cco05g2918 707 Pfam Glycosyl transferase family group 2 342 548 IPR001173 -
Cco05g2918 707 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 240 465 IPR029044 -
Cco05g2918 707 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 177 705 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Cco05g2918 707 SUPERFAMILY Nucleotide-diphospho-sugar transferases 250 527 IPR029044 -
Cco05g2918 707 FunFam probable xyloglucan glycosyltransferase 5 241 466 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2918 Cco-Chr5:36712027 Cco08g1854 Cco-Chr8:29555363 0.00E+00 dispersed
Cco05g2918 Cco-Chr5:36712027 Cco02g2339 Cco-Chr2:35822416 4.70E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2918 - - - 0.0