Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2919 ATGGGTGATCTCGAGAATGATGAAATGGGTTTTAGGAATTCGAATGAAGGGTTAATGAATTGTCCATCAACAATGGCGATGGGGTCTTTCTATGGGTCGGGTTGGGATCCACTGGTTTCTTTTGGTCAAAGTGAGAATTTTGGGGCAGCTTCTTCAATGGTTTCCTCTCATGGCGAATTTTCCAATTCTTTTCCTGTTGTTTTGGAGAACCATGGAGGGAGTGGGACTGCACAACAAGGTGTTCAATATCCGACAGATTTGGAGATGAGTACGAAGTTGCCATGTTTTGGCAGTGGGAATTATTCAGACATGTTTGGTTCTTCTTTTGGTCTTGCTGGGCAGATTCTTGGTGGGTGTTCTTCAAATTACAGAAATGCACAAACATCACAAGAAAATTTACCATTATCTGGTGAAGAAACTGCTGTAGGATCACCAAATGGTAAAATCAGAAAACGAGCTCTTGATTCCACTTTCCCATTTAGTCCAAATAAGAAATCTGAAGTGAAATTGAAGAAGGATGTTTCTGGAGACAGTTCCAGTACACAAGAAGAGAAGAATGCAGAAATGGAGCAAAACTTAGGTGGGAATTCACGTGGTAAGGCAACTGGAAAACAAACTAAAGAAAAATCTAATAATAGTGCTGAAGCTCCTAAGGAAAACTACATTCATGTTCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAACGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGGAAGGCTGTAATGCTTGATGAAATTATCAACTATGTTCAATCACTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACTGTCAACCCGGACGTGAATATCGATATCGAGAGGATTTTATCCAAAGATATTTTCCACGCACGAGGCGGCAATGGAACTGTTCTTGGATTTGATCACGGGTTGAGCGCTGTTTCCCCAGTCCCTCCTCACCGAATGTTTCAGTTTCAAGGGGCAATGTCGAATATGGCAACCACATCCACACAGTTTCCTCCTTTGCCTCAGACGATGTTAGAAAGCGATATTCAAAGTCTTCTTCAAATGGGATTCGACTCGGGTTCGGCCCTTGACAATTTGGGACCAAACGGGCGGTTGAAACCAGAGCCCTAA 1185 42.87 MGDLENDEMGFRNSNEGLMNCPSTMAMGSFYGSGWDPLVSFGQSENFGAASSMVSSHGEFSNSFPVVLENHGGSGTAQQGVQYPTDLEMSTKLPCFGSGNYSDMFGSSFGLAGQILGGCSSNYRNAQTSQENLPLSGEETAVGSPNGKIRKRALDSTFPFSPNKKSEVKLKKDVSGDSSSTQEEKNAEMEQNLGGNSRGKATGKQTKEKSNNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIERILSKDIFHARGGNGTVLGFDHGLSAVSPVPPHRMFQFQGAMSNMATTSTQFPPLPQTMLESDIQSLLQMGFDSGSALDNLGPNGRLKPEP 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36719300 36721132 - CcPI632755_05g029190.1 Cco05g2919 180547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2919 394 SMART finulus 236 286 IPR011598 GO:0046983(InterPro)
Cco05g2919 394 MobiDBLite consensus disorder prediction 180 210 - -
Cco05g2919 394 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 295 IPR036638 GO:0046983(InterPro)
Cco05g2919 394 Pfam Helix-loop-helix DNA-binding domain 233 281 IPR011598 GO:0046983(InterPro)
Cco05g2919 394 Gene3D - 227 300 IPR036638 GO:0046983(InterPro)
Cco05g2919 394 MobiDBLite consensus disorder prediction 153 240 - -
Cco05g2919 394 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 95 360 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cco05g2919 394 MobiDBLite consensus disorder prediction 165 179 - -
Cco05g2919 394 CDD bHLH_AtBPE_like 220 305 - -
Cco05g2919 394 FunFam Basic helix-loop-helix transcription factor 227 299 - -
Cco05g2919 394 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 280 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2606 Cco-Chr5:34317066 Cco05g2919 Cco-Chr5:36719300 4.20E-44 dispersed
Cco05g2919 Cco-Chr5:36719300 Cco08g1853 Cco-Chr8:29551013 2.20E-47 dispersed
Cco05g2919 Cco-Chr5:36719300 Cco02g0529 Cco-Chr2:4951182 1.10E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59413 PF00010 HLH 4.00E-06 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2919 - - - 0.0