Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2921 ATGGCTATGGAAGTTACTTCTGAGTCTCAGCAACATTCTCACTACCATTACCATAGCCAGGCAAGTTCAGCAGGAGTTGTCTCTAACACCATGTCAAATAGCTTCTTAGCTTCTCACCACTCCAATGGAGATTTTTATTTTTCTCCCTTGTCTGTAATGCCACTTAAGTCAGATGGGTCTCTTTGTATCATGGAATCAATCAGCGCATCACAACCTCAGGAAACATTGCCAAATATCTCACCAAAATTGGAGGACTTTCTTGGTGGTGCAACTCATGGAAAAGAGGCCACAACTCTAAGCTTAGACAACATATATTACAATCAAAATAATGAGGTTGATTCAGAGAGTCAACATTCTTTGGATCTTTTTAAGCAACAAGAGCAAATACATATTTTTTTTCATTCTCAGCGATATTATTCTGGACTGCTCCAGTATCCTACTGAGGATCCTAACAAGGAGTCTCATATTGCAAGCTGTTATTCTGAAATTCGACAAGATATGGAGCAGCGGATAAATGGCTGCTGCTTTGGAGGGATGAATTGCCAAGATTTGCAGCCACTTAGCTTGTCCACGAGTCCTAGTTCTCAGTCTAGTTGTGTTACTGCTCCAAGCCAAATTTCTCAACCTGGACCAGCCACCATGGAAACAAAGAAAAGGGCTTTCGACAATCGAAAGCAGTCGGTCCATCGGAAGTCAATCGACACGTTCGGACAAAGAACTTCGCAGTACAGAGGTGTGACAAGGCATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGACAATAGTTGTAAGAAGGAAGGTCAAACGAGGAAAGGAAGACAAGTGTATCTTGGTGGCTATGATATGGAGGAAAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCAACACATTTAAACTTCCCGGTAAAGAACTATCAACTTCAAATTGAAGAAATGAAGAATATGAACCGTCAAGAATACGTTGCACACCTGAGAAGGAAAAGCAATGGATTCTCCAGGGGAGCTTCCATATACAGGGGAGTAACTAGACATCATCAACATGGGAGATGGCAAGCTCGAATCGGAAGAGTCGCAGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCTGCAGAAGCATATGACATAGCAGCTATCAAGTTTCGCGGAGTAAATGCTATTACAAACTTCGACATGTCAAGGTACAATGTAGAAAGGATCATAGCAAGCAGTAGCCTCCTTTCAGGAGAGTTTGCGAGGCGAAACACAGAACAAAAACCAACCAACACCATCAAACATAAAGATCCAAAACAGAACATCGATAAAATCGATGATCCCTCGAAGATATCAAACAACTTGGACCGGAAGGCGGTATTCAACGACAAGCCGATATTGGATCCAAGTGCAATGGTAATGGTGAATTTTTCAAGCAAGTACAAGGCTCACTTCTCCAATGCTTCCTCTGCTGTGAGCAGCAGCAGCAGCTCAAGGGAAACAAGTCCTGATAAGTGA 1524 42.78 MAMEVTSESQQHSHYHYHSQASSAGVVSNTMSNSFLASHHSNGDFYFSPLSVMPLKSDGSLCIMESISASQPQETLPNISPKLEDFLGGATHGKEATTLSLDNIYYNQNNEVDSESQHSLDLFKQQEQIHIFFHSQRYYSGLLQYPTEDPNKESHIASCYSEIRQDMEQRINGCCFGGMNCQDLQPLSLSTSPSSQSSCVTAPSQISQPGPATMETKKRAFDNRKQSVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHLNFPVKNYQLQIEEMKNMNRQEYVAHLRRKSNGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGVNAITNFDMSRYNVERIIASSSLLSGEFARRNTEQKPTNTIKHKDPKQNIDKIDDPSKISNNLDRKAVFNDKPILDPSAMVMVNFSSKYKAHFSNASSAVSSSSSSRETSPDK 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36731248 36733769 - CcPI632755_05g029210.1 Cco05g2921 180549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2921 507 ProSiteProfiles AP2/ERF domain profile. 242 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2921 507 CDD AP2 343 404 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2921 507 SUPERFAMILY DNA-binding domain 241 310 IPR016177 GO:0003677(InterPro)
Cco05g2921 507 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 157 440 - -
Cco05g2921 507 FunFam AP2-like ethylene-responsive transcription factor ANT 241 310 - -
Cco05g2921 507 ProSiteProfiles AP2/ERF domain profile. 344 402 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2921 507 MobiDBLite consensus disorder prediction 488 507 - -
Cco05g2921 507 MobiDBLite consensus disorder prediction 1 20 - -
Cco05g2921 507 FunFam AP2-like ethylene-responsive transcription factor 343 404 - -
Cco05g2921 507 CDD AP2 241 309 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2921 507 Pfam AP2 domain 242 300 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2921 507 Pfam AP2 domain 345 394 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2921 507 MobiDBLite consensus disorder prediction 195 212 - -
Cco05g2921 507 MobiDBLite consensus disorder prediction 424 451 - -
Cco05g2921 507 SUPERFAMILY DNA-binding domain 343 404 IPR016177 GO:0003677(InterPro)
Cco05g2921 507 SMART rav1_2 242 314 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2921 507 SMART rav1_2 344 408 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2921 507 MobiDBLite consensus disorder prediction 430 451 - -
Cco05g2921 507 Gene3D AP2/ERF domain 241 310 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2921 507 Gene3D AP2/ERF domain 344 404 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2921 507 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2921 507 PRINTS Ethylene responsive element binding protein signature 384 404 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2921 507 MobiDBLite consensus disorder prediction 195 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1540 Cco-Chr4:30761904 Cco05g2921 Cco-Chr5:36731248 6.00E-134 dispersed
Cco05g2921 Cco-Chr5:36731248 Cco07g1482 Cco-Chr7:28971771 4.40E-101 dispersed
Cco05g2921 Cco-Chr5:36731248 Cco08g1852 Cco-Chr8:29537290 1.00E-137 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59414 PF00847 AP2 1.10E-13 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2921 K09285 - csv:101212143 769.615