Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2931 ATGGCCACTCCCCTTTTCCGGTCGTCGGTTTTCTTGGCTGTTTTTGTTTCTCAGGTGGTCTTCTCCGCCTCCGCCTCATCGTGGACAGTCAAATATCTGCCTGGATTCTCAGGTCCTCTTCCGTTTGAACTTGAAACTGGGTATGTGGGAGTGGGGGATTCGGAGGAAGTTCAGTTGTTTTATTACTTTGTCAAATCCCAAGGAAATCCCCAAACCGATCCTCTAATGACTTGGTTGGCCGGCGGCCCTGGTTGCTCTGCTTTCTCTGGTCTAGCCTTTGAAATTGGTCCTATAAATTTCAAGGTAGAGCCATACAATGGAACCGTACCTCAACTAATCTTGAATCCTGATGCATGGACTAAGAAAGCTAGTATTCTATTTATAGATTCGCCTGTTGGCACTGGATTTTCATATAGTCGAACTCTACGAGGCTCCAAGAGAGGAGATTTTTTACAAGTAGAACAAATTCATCAATTTTTAAGAAAGTGGCTCGCAAACCACCCAGAATTTATATCTAATCCATTTTACGTTGGTGGAGACTCTTACTCTGGTATGATTGTTCCACCTGTTACTCAAGCAATCTCAGAAGGAAATAAACACAAAGTCCCACTTATAAACCTCCAGGGATACATCGTGGGAAATCCAGTCAGCGTACGTAAAACAAACGATAATTCTAGGATTCCTTATGCTTATAGATTGACGCTCATCTCTGCAGAACTGTATGAGTCATTAACAAATAGTTGCAAGGGAGAATATGAAAATGTTGATCCAAATAACGAGGAGTGCGTCAATCATGTATCAACCTTCAAAAAGTGTGTGGGTAGAATCAATTATTGGTGTATTTCTTGCCCTTATTGTGAGGATGTATCTTCGGCGCCACAAGATAAGTTTGGACGGCGAAGATCTCTCTACAACACCTCCCAAGAAGTGCTTCTTGCTACGAGAGTGTTACCTCCTCCTTCTCTTGACTGTCAAGAGTATAAGTACTACCTTAGTTACTATTGGGCAAACGATGACCAAGTTCGAAAAGCACTTCACATACGTGAGGGAACTATTGAAGAATGGATAAGATGCCAGAATCGTAAAAATTACCAATATGATATTATGAGTGTTGTTTCTTATCATGTGAATCTTAGTTTTAAAGGTTATCGATCTTTGGTTTTTAGTGGGGATCATGATCTAATGGTGCCGGTCATAGACACTGAAGCATGGGTCAGGTCCCTAAGTTATCCTATCGTCGATGATTGGAGACCTTGGTTTAACACGGAAGATCAAATACTTGGATACACAAGAACGTATGCCAATAACATGACATTTGCGACCATTAAAGGTGGAGGGCACACACCAGAATTCATGCAGACTCAAAGTCGCATAATGTTTTATAGATGGATACGAGGAGAATCTTTATGA 1410 41.49 MATPLFRSSVFLAVFVSQVVFSASASSWTVKYLPGFSGPLPFELETGYVGVGDSEEVQLFYYFVKSQGNPQTDPLMTWLAGGPGCSAFSGLAFEIGPINFKVEPYNGTVPQLILNPDAWTKKASILFIDSPVGTGFSYSRTLRGSKRGDFLQVEQIHQFLRKWLANHPEFISNPFYVGGDSYSGMIVPPVTQAISEGNKHKVPLINLQGYIVGNPVSVRKTNDNSRIPYAYRLTLISAELYESLTNSCKGEYENVDPNNEECVNHVSTFKKCVGRINYWCISCPYCEDVSSAPQDKFGRRRSLYNTSQEVLLATRVLPPPSLDCQEYKYYLSYYWANDDQVRKALHIREGTIEEWIRCQNRKNYQYDIMSVVSYHVNLSFKGYRSLVFSGDHDLMVPVIDTEAWVRSLSYPIVDDWRPWFNTEDQILGYTRTYANNMTFATIKGGGHTPEFMQTQSRIMFYRWIRGESL 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36803452 36807074 + CcPI632755_05g029310.1 Cco05g2931 180559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2931 469 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 26 462 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Cco05g2931 469 FunFam Serine carboxypeptidase-like 11 24 469 - -
Cco05g2931 469 Pfam Serine carboxypeptidase 34 466 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2931 469 Gene3D - 322 469 - -
Cco05g2931 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2931 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2931 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2931 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 437 450 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2931 469 Gene3D alpha/beta hydrolase 23 297 IPR029058 -
Cco05g2931 469 FunFam Carboxypeptidase 323 468 - -
Cco05g2931 469 SUPERFAMILY alpha/beta-Hydrolases 29 467 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0465 Cco-Chr4:14641215 Cco05g2931 Cco-Chr5:36803452 4.80E-159 dispersed
Cco05g2931 Cco-Chr5:36803452 Cco09g0768 Cco-Chr9:7041443 9.20E-93 dispersed
Cco05g2931 Cco-Chr5:36803452 Cco05g2932 Cco-Chr5:36810265 2.90E-163 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2931 K16296 - csv:101210918 544.658