Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2932 ATGGCCACCTTCGCCACCATCCTTTTCCGATGCTCTGTTTTCCTCCTCCTACTTTTTCAGCTCTTCTCCGCCGCTGCCGCCACCGGAGGATCATACTCGAGGGTGAAGTATCTGCCGGGATTCTCAGGACCTCTTCCCTTCCAACTAGAAACTGGATACGTTGGTGTGGGAGATTCAGATCAATTTCAGATTTTTCACTATTTTATCAAATCTGAAGCAAATCCCAAAACGGATCCTCTCATTATTTGGCTTACCGGAGGTCCCGGTTGCTCTGCCCTCTCCGGACTTGCCTTTGAAATTGGTCCTATAAGTTTCGATGAAGAATCAAACGAAGGGAGCATTCCTCGATTAATCTTAAATCCCTATTCATGGACGAAGAAATGTAGCATAATATTTGTAGATTTACCTGCGGGGACTGGATTTTCATATGATACAACTTCGTCTACCTTTAAACCGGGAGATTTTAATCAAATTCACCACTATCTTCAATTTTTGAGAAAGTGGTTTGTTGATCATCCAGAGTTTACAACAAATCCATTCTATATTGGCGGAGATTCATACTCTGGGATGATTGTTCCCGTAATTGCTCAAAAAATTGTAGAAGGAAATACACATGATTTTTCATTTATAAATTTTCAGGGCTATATATTGGGAAATCCTTACACTATTCGTGATTCAGGTGACAATTTTGCAATTCCTTTTGCTCATAGGATGACTCTTATATCTGATGAATTATTTGAGTCATTGAAAACTAGTTGTAAAGGAAAATATGTGAACATTGATCCAAGCAATGTGGAGTGTTTAAGACATTACGAGACGTATAAAAAGTGTATATCGAAAGTCGAGCCTGCAAATATTTTGGATCCAAAGTGTCAATTTCAGTCTCCAAAGCAACAAGATGTATATGATCGAAGATCTCTCAATAGCATCTCAAAGTCGTTGTTTGATCAAAGCACACCACTCTCCTTTCGTAGTTGTCCTGAGTTTAAATACAAACTTTCTAATGATTGGGCTAACGCGGATCAAGTTCGAGAGGCACTTCACATTCGTGAGGGAAGTATTGGAGAATGGATAAGATGTAAGAACAGAAAAGAAATGTATACTTTTGAACTCGATACTGTTTTCCCATATCATGTGAACCTTAGTTCTAAAGGATATCGATCTTTGATCTATAGTGGCGATCATGATATGTTAGTGCCTCATTTGGACACTCAGGCATGGATCAAAGCTTTAAACTACTCCATTGTTGATGATTGGAGACCCTGGTTTATCTTGGATCAAGTAGCCGGATATACCCGATACTATGCAAATAAGATGACATTTGCAACTATAAAAGGTGGAGGGCACACAGCAGAATACACAAAAAGAGAATGCAGCATAATGTTTAGCAGATGGATATCAGGACAATCCTTATAA 1416 39.05 MATFATILFRCSVFLLLLFQLFSAAAATGGSYSRVKYLPGFSGPLPFQLETGYVGVGDSDQFQIFHYFIKSEANPKTDPLIIWLTGGPGCSALSGLAFEIGPISFDEESNEGSIPRLILNPYSWTKKCSIIFVDLPAGTGFSYDTTSSTFKPGDFNQIHHYLQFLRKWFVDHPEFTTNPFYIGGDSYSGMIVPVIAQKIVEGNTHDFSFINFQGYILGNPYTIRDSGDNFAIPFAHRMTLISDELFESLKTSCKGKYVNIDPSNVECLRHYETYKKCISKVEPANILDPKCQFQSPKQQDVYDRRSLNSISKSLFDQSTPLSFRSCPEFKYKLSNDWANADQVREALHIREGSIGEWIRCKNRKEMYTFELDTVFPYHVNLSSKGYRSLIYSGDHDMLVPHLDTQAWIKALNYSIVDDWRPWFILDQVAGYTRYYANKMTFATIKGGGHTAEYTKRECSIMFSRWISGQSL 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36810265 36813047 + CcPI632755_05g029320.1 Cco05g2932 180560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2932 471 FunFam Carboxypeptidase 325 470 - -
Cco05g2932 471 Gene3D alpha/beta hydrolase 30 302 IPR029058 -
Cco05g2932 471 FunFam Serine carboxypeptidase-like 11 29 471 - -
Cco05g2932 471 SUPERFAMILY alpha/beta-Hydrolases 35 470 IPR029058 -
Cco05g2932 471 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 465 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Cco05g2932 471 Pfam Serine carboxypeptidase 39 468 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2932 471 Gene3D - 326 471 - -
Cco05g2932 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 439 452 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2932 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2932 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco05g2932 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2330 Cco-Chr5:31840864 Cco05g2932 Cco-Chr5:36810265 5.00E-184 dispersed
Cco05g2331 Cco-Chr5:31857529 Cco05g2932 Cco-Chr5:36810265 1.20E-193 dispersed
Cco05g2332 Cco-Chr5:31867585 Cco05g2932 Cco-Chr5:36810265 1.90E-10 dispersed
Cco05g2932 Cco-Chr5:36810265 Cco09g0768 Cco-Chr9:7041443 2.90E-94 dispersed
Cco05g2931 Cco-Chr5:36803452 Cco05g2932 Cco-Chr5:36810265 2.90E-163 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2932 K16296 - csv:101207623 598.586