Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2935 ATGAGCAGTTTCTCCTTGAAAAGCTTCTCCTGGAGGAAATCGAAATCCTCGAAATCGGATTCCTCCCATTCCTTTTCGTCGTCGGAACAGCGGTTTCTGACGGAAAATATGGGAACTCTGAGAGTGCCGGAGACCGTTCCTTCTCCCGCTGAGGATTGTGATAGGCTCAAGAAAGCTTTTGATGGATGGGGAACGGATGAGAAGACATTGATAAGGATATTAGGACAAAGAAATGCAGCTCAAAGGAAGGCAATTAGAGAGACTTATCTCGAGCTATACAATGAGTCGTTAATTGATCGCATCAATGCTGAACTCTCTGGTGATTTTAGAAAAGCGGCGATTTTGTGGGCATATGATCCTGCAGAGAGGGATGCAAGATTGGCAAATGAAGCTTTGAGGTCATATAAGAAAGGCATCCATGAGCTTCAAGTATTAGTGGAGATAGCCTGTGCCACATCTCCTTACCATCTGATGGCAGTAAGGCAGGCCTACTGTTGTCTCTTTGATTGCTCGCTTGAAGAAGACATTTTCTCCACAATCTCCATGCCTCTTAGAAAGCTTCTTGTTGGTGTGGTGAGTTCCTTCAGGCATGATAAAGAGGTGGTGGACAGTATTGTTGCTGATTCAGAAGCCGATTTATTACACGATGCTATCAAATCGAAGCAATTAAACCGCAGTGGCGTCATTTGGATACTCAGCACAAGGAATTTCTTTCAGCTTAGAGCAACCTTTGCATGCTATAAGCAAAAGTATGGAAACCCTATTGACCAGGACATTGTGAAATGTGGAACTAGTGATTTAGAATCTCTCTTCAAAATGGCGATTTGGTGCATTGACACTCCTGAAAAACACTTTGCTAGGGTAATCAACAAGGCCATTGTTGGGCTTGGGACAGATGAAGATTCTCTAACCAGAGCCATTGTATGTCGAGCTGAGATAGACACAATGAAAATTAGAGAAGAGTATTCCAACATGTTCAAAGGCAAGCTCGATGACGACGTTATCGGCGACACATCTGGAGACTACAAGGACATGTTGATGATCTTGCTTGGAGCTAAAGTTTGA 1065 43.47 MSSFSLKSFSWRKSKSSKSDSSHSFSSSEQRFLTENMGTLRVPETVPSPAEDCDRLKKAFDGWGTDEKTLIRILGQRNAAQRKAIRETYLELYNESLIDRINAELSGDFRKAAILWAYDPAERDARLANEALRSYKKGIHELQVLVEIACATSPYHLMAVRQAYCCLFDCSLEEDIFSTISMPLRKLLVGVVSSFRHDKEVVDSIVADSEADLLHDAIKSKQLNRSGVIWILSTRNFFQLRATFACYKQKYGNPIDQDIVKCGTSDLESLFKMAIWCIDTPEKHFARVINKAIVGLGTDEDSLTRAIVCRAEIDTMKIREEYSNMFKGKLDDDVIGDTSGDYKDMLMILLGAKV 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36819713 36824064 - CcPI632755_05g029350.1 Cco05g2935 180563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2935 354 Gene3D Annexin 31 118 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 PANTHER ANNEXIN 37 351 - GO:0005509(PANTHER)|GO:0005737(PANTHER)
Cco05g2935 354 MobiDBLite consensus disorder prediction 1 31 - -
Cco05g2935 354 SMART annex3 297 349 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 SMART annex3 143 191 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 SMART annex3 64 116 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 SMART annex3 224 274 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 FunFam Annexin 37 118 - -
Cco05g2935 354 PRINTS Plant annexin signature 265 283 IPR009118 -
Cco05g2935 354 PRINTS Plant annexin signature 158 172 IPR009118 -
Cco05g2935 354 PRINTS Plant annexin signature 200 220 IPR009118 -
Cco05g2935 354 ProSitePatterns Annexin repeat signature. 297 349 IPR018252 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 ProSiteProfiles Annexin repeat profile. 47 118 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 SUPERFAMILY Annexin 38 351 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 Gene3D Annexin 281 352 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 FunFam Annexin 119 192 - -
Cco05g2935 354 ProSiteProfiles Annexin repeat profile. 280 351 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 Pfam Annexin 210 271 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 Pfam Annexin 143 190 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 Pfam Annexin 52 114 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 Pfam Annexin 285 348 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 FunFam Annexin 205 279 - -
Cco05g2935 354 PRINTS Annexin family signature 61 83 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 PRINTS Annexin family signature 337 350 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 PRINTS Annexin family signature 101 117 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 PRINTS Annexin family signature 293 313 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 ProSiteProfiles Annexin repeat profile. 119 193 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 Gene3D Annexin 119 192 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 ProSiteProfiles Annexin repeat profile. 203 276 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 Gene3D Annexin 205 279 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2935 354 FunFam Annexin 280 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2935 K17098 - - csv:101221769 619.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2935 Cco-Chr5:36819713 Cco10g0843 Cco-Chr10:17690247 4.10E-69 dispersed
Cco05g2935 Cco-Chr5:36819713 Cco05g2937 Cco-Chr5:36838799 9.70E-63 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g546 . . . . . . . Bma15g00014 . . . . . . . . . . . . . . . . Cla05g02669 Cam05g2866 Cec05g2903 Cco05g2935 Clacu05g2870 Cmu05g2716 Cre05g2833 Cone13ag0722 Cone19ag0721 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004951 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 2 0 33