Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2936 ATGGCGGATTCTGCCATGGAAGTTCTCACTCGAGCTCTCTCAGGGCATGGAATAAATGAGAAGGCAATGATAGATACATTGGGAAAATGGGATCATGAAGAGAAGAAATTGTTCAGAAAGAAAAGTAGCCATTTTTTCAGTGAAGATGAACGCTCCTTTGAGCGATGGGAAGAACATGGCATGAGACTTCTCAAGCATGAATTTATGCGCTTTAAGAATGCTGTGGTGCTATGGACAACACATCCATGGGAAAGAGATGCGCGTTTGGTAAAGGAAGCATTGAGCAAAGGGCATCATAGCCAAAACATAAACATTCTAATAGAAGTGGCTTGTACTAGAACTTCTGATGAGCTCTTGGGAGCAAGGAAGGCTTACCATTCCCTCTTTGATCATTCCATTGAAGAAGATGTTGCCAGCCACATTAGTGGCCCTGAGCGCAAGCTTTTGGTTGCATTAATGAGTGCATATAGATACGAAGGGCCAAAGTATAAGGAGGAGACAGCAAAATCTGAAGCAAAAAAGCTTGCTCATTCAATTAAGGAGGCAGCCAGCAAAAAGAGCAGCCTCATTGAAGATGAAGAGGTTGTGAGAATACTCTCAACAAGAAGCAAACACTTTCTTCATGCCCTTTCCAAACACTACAAGGAAATCTCAGCAGGTCGCTCCATTGATGAGGATCTTCATCGTGACTTGAGGCTTCAAGAGGCAGTGTTGTGCTTAGCCAATCCTATCAAGTATTTCACTCAGATTCTGAATGTGTCATTAAAAGTCGACGCGGACAAGAAAATAAAAAAGGTATTGACTCGAATCGTCGTCACGAGAGCCGACATAGACATGAAGGAGATCAAAGTTGAGTTCAAAAATCAGTTTGGGGTTTCATTGGCTGAAAAAATTGGGTCTGTGTGCAATGGTAGCTACAAAGATTTCTTGCTCACTTTGCTGGCAAGATCAGACTAA 957 42.42 MADSAMEVLTRALSGHGINEKAMIDTLGKWDHEEKKLFRKKSSHFFSEDERSFERWEEHGMRLLKHEFMRFKNAVVLWTTHPWERDARLVKEALSKGHHSQNINILIEVACTRTSDELLGARKAYHSLFDHSIEEDVASHISGPERKLLVALMSAYRYEGPKYKEETAKSEAKKLAHSIKEAASKKSSLIEDEEVVRILSTRSKHFLHALSKHYKEISAGRSIDEDLHRDLRLQEAVLCLANPIKYFTQILNVSLKVDADKKIKKVLTRIVVTRADIDMKEIKVEFKNQFGVSLAEKIGSVCNGSYKDFLLTLLARSD 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36834322 36837356 + CcPI632755_05g029360.1 Cco05g2936 180564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2936 318 PRINTS Annexin family signature 14 36 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2936 318 PRINTS Annexin family signature 257 277 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2936 318 PRINTS Annexin family signature 285 300 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2936 318 PANTHER ANNEXIN 3 315 - GO:0005509(PANTHER)|GO:0005737(PANTHER)
Cco05g2936 318 SUPERFAMILY Annexin 5 316 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2936 318 Gene3D Annexin 243 315 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2936 318 Pfam Annexin 86 152 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2936 318 Pfam Annexin 264 313 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2936 318 ProSiteProfiles Annexin repeat profile. 81 154 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2936 318 Gene3D Annexin 81 153 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2936 318 FunFam Annexin 81 153 - -
Cco05g2936 318 ProSiteProfiles Annexin repeat profile. 242 315 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2936 318 FunFam annexin D4 243 315 - -
Cco05g2936 318 Gene3D Annexin 167 239 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2936 318 SMART annex3 264 313 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cco05g2936 318 SMART annex3 100 152 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2936 K17098 - - csv:101222238 596.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2936 Cco-Chr5:36834322 Cco09g1712 Cco-Chr9:28554848 5.50E-41 dispersed
Cco05g2936 Cco-Chr5:36834322 Cco05g2937 Cco-Chr5:36838799 8.50E-34 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g498 . . . . . Bpe10g00999 Bma14g01932 Bma15g00027 . . . . . . . . Cpe01g01827 . . . . . . . Cla05g02670 Cam05g2867 Cec05g2904 Cco05g2936 Clacu05g2871 Cmu05g2717 Cre05g2834 Cone13ag0728 . . . . . . . Blo06g01030 . . . . . . . . . Cmo15g01028 . Cma15g00981 . . Cpe13g00346 . Bhi12g00945 . . . . . . Cla01g00642 Cam01g0669 Cec01g0661 Cco01g0687 Clacu01g0658 Cmu01g0631 Cre09g1874 Lsi09g00690 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007582 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 34