Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2942 | ATGCTTTTGTTTTCGGATGTTCTATTCTGCATTCCGTTTCTGGGTTGTCTCAATGTGACTTTGGATGTTTCTGGTTCTTTGATTGGTTTACTTTGTGTTGCTGCTTTTCTATTATCTATAGGCTTCAATTTTCTTTTAGTTAAGTTTTTGTATGGAGTTCTCGGTTTAGGAAGCATTCTATTGATAAAAATGTCATCTGCCAATCCTTATTTTGATGACATTCGGACCAAACCTGAGGTTATTGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAACCTAACGTAGCTGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCAGGTTGCAAGCCTAGGGTGCACAACCGATGTCCAACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTAGGCATATACCCATACTACAGCAAGCTGAAACACGAATCTCAATGTGTGTATCGGCCCTATAACTGTCCATATGCGGGATCGGAATGCACAGTTATTGGCGATATCCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGAAGCACTTTCAATCACCGGTATGTCAAGTCAAATCCGCAAGAGGTTGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCTTTCTTGCGGTTTATGGGCGATGATAATGAAGCAAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATTATCCAACGTAATATGGCGCTCTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAACTCAGGGAATGTTCTTTACTTTCTAGGATCTATTGCCAGTTTCAGGATTCTTTTCTTTCATGCTCTCTTGTGATTAGGGATCAATCTGTCAGAATTTTCCTAGGCCTATTTGAGATGTCACTCAAGTTACACCATATTGATTTAAAGGGTGGTTCAGGTACCCAGAAAAGGCTAAAGGATCTCTCGGCTCAGTCTGCCAATAAGTACTGTGCCGATTGTGGTTCTCCAGATCCAAAATGGGTATCTGTGAGTTTTGGGGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCGGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGAGTGTAGGTGGAAATACTGCCGTAAACAAAAAGTATGAAGTTTGCATCCCAGATGGCAATAAAAAGCCAAAACCAGACTCCTCCATAGAGGAGCGTTTTGATTTTATAAGGAAAAAGTATGAGCTGCTGCAATTTGCAAGTCTAGACGATCAGTTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATCACTCTCGCACAGCGCTTCCAGTACTGATGTAAACCTAGAAAGGAGGAATTATGAAAAACTACCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACATAGGAACTGCAAGAAGGGAAATGCAAATGCATTGGTATTAAGCAGCTCAATGGCGGGTATGATTGAATTCGTTGGTTTAATCAAGGTCAACGTGGTTAGAGGAACCAATTTAGCTGTCAGGGATGTCGTGACGAGTGATCCATATGTAATTCTCTCGTTGGGCCACCAATCAGTGAAGACACGAGTTATAAAGAGCAGTTTGAATCCAGTCTGGAATGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGTGAAGCAGAAATCGATATCAATCCACTGCTCACCGCAGCCCGAGCCTGTGAGAGGTCTACAATCAGTGAACCAATGCAGTTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTAGATGGGAAGATACGACAAGACATCTCTTTGAAGCTGCAGAACGTCGAGCGGGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG | 2307 | 42.91 | MLLFSDVLFCIPFLGCLNVTLDVSGSLIGLLCVAAFLLSIGFNFLLVKFLYGVLGLGSILLIKMSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRECSLLSRIYCQFQDSFLSCSLVIRDQSVRIFLGLFEMSLKLHHIDLKGGSGTQKRLKDLSAQSANKYCADCGSPDPKWVSVSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSVGGNTAVNKKYEVCIPDGNKKPKPDSSIEERFDFIRKKYELLQFASLDDQFFCPFPPPQKRNSSLSHSASSTDVNLERRNYEKLPTKTRIGSAFRNSWGRKDSEHRNCKKGNANALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGHQSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTISEPMQLGKWVASKENTLAKDGIISLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ | 768 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 36885713 | 36897564 | + | CcPI632755_05g029420.1 | Cco05g2942 | 180570 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2942 | 768 | SUPERFAMILY | RING/U-box | 114 | 161 | - | - | |
Cco05g2942 | 768 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 171 | IPR013083 | - | |
Cco05g2942 | 768 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 78 | 171 | - | - | |
Cco05g2942 | 768 | Pfam | Sina, zinc finger | 169 | 244 | - | - | |
Cco05g2942 | 768 | CDD | RING-HC_SIAHs | 118 | 156 | - | - | |
Cco05g2942 | 768 | Pfam | Putative GTPase activating protein for Arf | 413 | 527 | IPR001164 | GO:0005096(InterPro) | |
Cco05g2942 | 768 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 412 | 527 | IPR037278 | - | |
Cco05g2942 | 768 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 229 | 361 | - | - | |
Cco05g2942 | 768 | ProSiteProfiles | Zinc finger RING-type profile. | 120 | 156 | IPR001841 | - | |
Cco05g2942 | 768 | PRINTS | HIV Rev interacting protein signature | 424 | 443 | IPR001164 | GO:0005096(InterPro) | |
Cco05g2942 | 768 | PRINTS | HIV Rev interacting protein signature | 464 | 485 | IPR001164 | GO:0005096(InterPro) | |
Cco05g2942 | 768 | PRINTS | HIV Rev interacting protein signature | 443 | 460 | IPR001164 | GO:0005096(InterPro) | |
Cco05g2942 | 768 | CDD | Sina | 234 | 359 | - | - | |
Cco05g2942 | 768 | ProSiteProfiles | Zinc finger SIAH-type profile. | 173 | 233 | IPR013010 | GO:0008270(InterPro) | |
Cco05g2942 | 768 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 611 | 705 | IPR035892 | - | |
Cco05g2942 | 768 | Pfam | Sina, TRAF-like domain | 264 | 358 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Cco05g2942 | 768 | ProSiteProfiles | C2 domain profile. | 594 | 710 | IPR000008 | - | |
Cco05g2942 | 768 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 408 | 768 | IPR044518 | GO:0005096(InterPro)|GO:0005543(InterPro) | |
Cco05g2942 | 768 | CDD | C2_ArfGAP | 611 | 755 | - | - | |
Cco05g2942 | 768 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD12 | 610 | 768 | - | - | |
Cco05g2942 | 768 | SMART | C2_3c | 613 | 708 | IPR000008 | - | |
Cco05g2942 | 768 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 172 | 228 | IPR013083 | - | |
Cco05g2942 | 768 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 229 | 359 | IPR008974 | GO:0005515(InterPro) | |
Cco05g2942 | 768 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 412 | 526 | IPR001164 | GO:0005096(InterPro) | |
Cco05g2942 | 768 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 120 | 155 | IPR049548 | - | |
Cco05g2942 | 768 | FunFam | stromal membrane-associated protein 1 isoform X1 | 401 | 532 | - | - | |
Cco05g2942 | 768 | CDD | ArfGap | 415 | 521 | - | - | |
Cco05g2942 | 768 | Gene3D | C2 domain | 611 | 765 | IPR035892 | - | |
Cco05g2942 | 768 | MobiDBLite | consensus disorder prediction | 81 | 107 | - | - | |
Cco05g2942 | 768 | Gene3D | Arf GTPase activating protein | 400 | 533 | IPR038508 | - | |
Cco05g2942 | 768 | SUPERFAMILY | TRAF domain-like | 173 | 355 | - | - | |
Cco05g2942 | 768 | SMART | arf_gap_3 | 412 | 533 | IPR001164 | GO:0005096(InterPro) | |
Cco05g2942 | 768 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 172 | 228 | - | - | |
Cco05g2942 | 768 | Pfam | C2 domain | 613 | 701 | IPR000008 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0811 | Cco-Chr1:8531273 | Cco05g2942 | Cco-Chr5:36885713 | 1.10E-166 | dispersed | |
Cco01g0813 | Cco-Chr1:8543281 | Cco05g2942 | Cco-Chr5:36885713 | 5.90E-59 | dispersed | |
Cco04g2303 | Cco-Chr4:36568251 | Cco05g2942 | Cco-Chr5:36885713 | 6.30E-88 | dispersed | |
Cco05g2942 | Cco-Chr5:36885713 | Cco06g0128 | Cco-Chr6:1240824 | 3.90E-125 | dispersed | |
Cco05g2942 | Cco-Chr5:36885713 | Cco03g0822 | Cco-Chr3:8999068 | 9.10E-90 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2942 | K04506 | - | csv:101221541 | 711.064 |