Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2942 ATGCTTTTGTTTTCGGATGTTCTATTCTGCATTCCGTTTCTGGGTTGTCTCAATGTGACTTTGGATGTTTCTGGTTCTTTGATTGGTTTACTTTGTGTTGCTGCTTTTCTATTATCTATAGGCTTCAATTTTCTTTTAGTTAAGTTTTTGTATGGAGTTCTCGGTTTAGGAAGCATTCTATTGATAAAAATGTCATCTGCCAATCCTTATTTTGATGACATTCGGACCAAACCTGAGGTTATTGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAACCTAACGTAGCTGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCAGGTTGCAAGCCTAGGGTGCACAACCGATGTCCAACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTAGGCATATACCCATACTACAGCAAGCTGAAACACGAATCTCAATGTGTGTATCGGCCCTATAACTGTCCATATGCGGGATCGGAATGCACAGTTATTGGCGATATCCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGAAGCACTTTCAATCACCGGTATGTCAAGTCAAATCCGCAAGAGGTTGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCTTTCTTGCGGTTTATGGGCGATGATAATGAAGCAAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATTATCCAACGTAATATGGCGCTCTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAACTCAGGGAATGTTCTTTACTTTCTAGGATCTATTGCCAGTTTCAGGATTCTTTTCTTTCATGCTCTCTTGTGATTAGGGATCAATCTGTCAGAATTTTCCTAGGCCTATTTGAGATGTCACTCAAGTTACACCATATTGATTTAAAGGGTGGTTCAGGTACCCAGAAAAGGCTAAAGGATCTCTCGGCTCAGTCTGCCAATAAGTACTGTGCCGATTGTGGTTCTCCAGATCCAAAATGGGTATCTGTGAGTTTTGGGGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCGGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGAGTGTAGGTGGAAATACTGCCGTAAACAAAAAGTATGAAGTTTGCATCCCAGATGGCAATAAAAAGCCAAAACCAGACTCCTCCATAGAGGAGCGTTTTGATTTTATAAGGAAAAAGTATGAGCTGCTGCAATTTGCAAGTCTAGACGATCAGTTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATCACTCTCGCACAGCGCTTCCAGTACTGATGTAAACCTAGAAAGGAGGAATTATGAAAAACTACCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACATAGGAACTGCAAGAAGGGAAATGCAAATGCATTGGTATTAAGCAGCTCAATGGCGGGTATGATTGAATTCGTTGGTTTAATCAAGGTCAACGTGGTTAGAGGAACCAATTTAGCTGTCAGGGATGTCGTGACGAGTGATCCATATGTAATTCTCTCGTTGGGCCACCAATCAGTGAAGACACGAGTTATAAAGAGCAGTTTGAATCCAGTCTGGAATGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGTGAAGCAGAAATCGATATCAATCCACTGCTCACCGCAGCCCGAGCCTGTGAGAGGTCTACAATCAGTGAACCAATGCAGTTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTAGATGGGAAGATACGACAAGACATCTCTTTGAAGCTGCAGAACGTCGAGCGGGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG 2307 42.91 MLLFSDVLFCIPFLGCLNVTLDVSGSLIGLLCVAAFLLSIGFNFLLVKFLYGVLGLGSILLIKMSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRECSLLSRIYCQFQDSFLSCSLVIRDQSVRIFLGLFEMSLKLHHIDLKGGSGTQKRLKDLSAQSANKYCADCGSPDPKWVSVSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSVGGNTAVNKKYEVCIPDGNKKPKPDSSIEERFDFIRKKYELLQFASLDDQFFCPFPPPQKRNSSLSHSASSTDVNLERRNYEKLPTKTRIGSAFRNSWGRKDSEHRNCKKGNANALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGHQSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTISEPMQLGKWVASKENTLAKDGIISLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36885713 36897564 + CcPI632755_05g029420.1 Cco05g2942 180570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2942 768 SUPERFAMILY RING/U-box 114 161 - -
Cco05g2942 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 171 IPR013083 -
Cco05g2942 768 FunFam E3 ubiquitin-protein ligase SINAT5-like 78 171 - -
Cco05g2942 768 Pfam Sina, zinc finger 169 244 - -
Cco05g2942 768 CDD RING-HC_SIAHs 118 156 - -
Cco05g2942 768 Pfam Putative GTPase activating protein for Arf 413 527 IPR001164 GO:0005096(InterPro)
Cco05g2942 768 SUPERFAMILY ArfGap/RecO-like zinc finger 412 527 IPR037278 -
Cco05g2942 768 FunFam E3 ubiquitin-protein ligase SINAT5-like 229 361 - -
Cco05g2942 768 ProSiteProfiles Zinc finger RING-type profile. 120 156 IPR001841 -
Cco05g2942 768 PRINTS HIV Rev interacting protein signature 424 443 IPR001164 GO:0005096(InterPro)
Cco05g2942 768 PRINTS HIV Rev interacting protein signature 464 485 IPR001164 GO:0005096(InterPro)
Cco05g2942 768 PRINTS HIV Rev interacting protein signature 443 460 IPR001164 GO:0005096(InterPro)
Cco05g2942 768 CDD Sina 234 359 - -
Cco05g2942 768 ProSiteProfiles Zinc finger SIAH-type profile. 173 233 IPR013010 GO:0008270(InterPro)
Cco05g2942 768 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 611 705 IPR035892 -
Cco05g2942 768 Pfam Sina, TRAF-like domain 264 358 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cco05g2942 768 ProSiteProfiles C2 domain profile. 594 710 IPR000008 -
Cco05g2942 768 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 408 768 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cco05g2942 768 CDD C2_ArfGAP 611 755 - -
Cco05g2942 768 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 610 768 - -
Cco05g2942 768 SMART C2_3c 613 708 IPR000008 -
Cco05g2942 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 228 IPR013083 -
Cco05g2942 768 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 229 359 IPR008974 GO:0005515(InterPro)
Cco05g2942 768 ProSiteProfiles ARF GTPase-activating proteins domain profile. 412 526 IPR001164 GO:0005096(InterPro)
Cco05g2942 768 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 120 155 IPR049548 -
Cco05g2942 768 FunFam stromal membrane-associated protein 1 isoform X1 401 532 - -
Cco05g2942 768 CDD ArfGap 415 521 - -
Cco05g2942 768 Gene3D C2 domain 611 765 IPR035892 -
Cco05g2942 768 MobiDBLite consensus disorder prediction 81 107 - -
Cco05g2942 768 Gene3D Arf GTPase activating protein 400 533 IPR038508 -
Cco05g2942 768 SUPERFAMILY TRAF domain-like 173 355 - -
Cco05g2942 768 SMART arf_gap_3 412 533 IPR001164 GO:0005096(InterPro)
Cco05g2942 768 FunFam E3 ubiquitin-protein ligase SINAT3 172 228 - -
Cco05g2942 768 Pfam C2 domain 613 701 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0811 Cco-Chr1:8531273 Cco05g2942 Cco-Chr5:36885713 1.10E-166 dispersed
Cco01g0813 Cco-Chr1:8543281 Cco05g2942 Cco-Chr5:36885713 5.90E-59 dispersed
Cco04g2303 Cco-Chr4:36568251 Cco05g2942 Cco-Chr5:36885713 6.30E-88 dispersed
Cco05g2942 Cco-Chr5:36885713 Cco06g0128 Cco-Chr6:1240824 3.90E-125 dispersed
Cco05g2942 Cco-Chr5:36885713 Cco03g0822 Cco-Chr3:8999068 9.10E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2942 K04506 - csv:101221541 711.064