Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2946 ATGGCCCTTCTCTCTGCTGAGCCTCGATTTCATGTCTTGGCTGTTGATGACAGCCTTGTTGATAGGAAGCTCATTGAAAGGCTCCTCAAAACTTCCTCCTTCAATGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGTTTGGTTAGAGAAAGAAATGGAAGCACGCATTCTCCTATTTCCCCTGAAAATCATCATCATCATCATCATCAACAAGAGATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTCAGAAAGATCAAGGAATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTTTGCTAAAACCAGTGAAATTATCTGATGTCAATAAACTTAAGCCTTTCATATGTAGAGGTAAAGCCAAGGAAATGGATTTCAACAATCTCAAGAGAAAGGAAATGGAAAAGAGCCAATCATCTGAGAGAACAAGAACAAAATACAATGAACTTTTCTGA 561 39.04 MALLSAEPRFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTHSPISPENHHHHHHQQEIEVNLIITDYCMPEMTGYDLLRKIKESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDFNNLKRKEMEKSQSSERTRTKYNELF 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36923275 36924774 - CcPI632755_05g029460.1 Cco05g2946 180574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2946 186 CDD REC_typeA_ARR 12 147 - -
Cco05g2946 186 ProSiteProfiles Response regulatory domain profile. 11 152 IPR001789 GO:0000160(InterPro)
Cco05g2946 186 SMART REC_2 10 148 IPR001789 GO:0000160(InterPro)
Cco05g2946 186 Pfam Response regulator receiver domain 75 144 IPR001789 GO:0000160(InterPro)
Cco05g2946 186 SUPERFAMILY CheY-like 9 144 IPR011006 -
Cco05g2946 186 Gene3D - 11 183 - -
Cco05g2946 186 MobiDBLite consensus disorder prediction 167 186 - -
Cco05g2946 186 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 176 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0785 Cco-Chr1:8246308 Cco05g2946 Cco-Chr5:36923275 1.00E-51 dispersed
Cco05g2760 Cco-Chr5:35446651 Cco05g2946 Cco-Chr5:36923275 3.40E-38 dispersed
Cco05g2946 Cco-Chr5:36923275 Cco10g1598 Cco-Chr10:29261022 1.30E-50 dispersed
Cco05g2946 Cco-Chr5:36923275 Cco06g1869 Cco-Chr6:28929583 5.00E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59417 PF00072 Response_reg 3.70E-20 CL0304 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2946 K14492 - csv:101207245 280.796