Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2946 | ATGGCCCTTCTCTCTGCTGAGCCTCGATTTCATGTCTTGGCTGTTGATGACAGCCTTGTTGATAGGAAGCTCATTGAAAGGCTCCTCAAAACTTCCTCCTTCAATGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGTTTGGTTAGAGAAAGAAATGGAAGCACGCATTCTCCTATTTCCCCTGAAAATCATCATCATCATCATCATCAACAAGAGATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTCAGAAAGATCAAGGAATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTTTGCTAAAACCAGTGAAATTATCTGATGTCAATAAACTTAAGCCTTTCATATGTAGAGGTAAAGCCAAGGAAATGGATTTCAACAATCTCAAGAGAAAGGAAATGGAAAAGAGCCAATCATCTGAGAGAACAAGAACAAAATACAATGAACTTTTCTGA | 561 | 39.04 | MALLSAEPRFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTHSPISPENHHHHHHQQEIEVNLIITDYCMPEMTGYDLLRKIKESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDFNNLKRKEMEKSQSSERTRTKYNELF | 186 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 36923275 | 36924774 | - | CcPI632755_05g029460.1 | Cco05g2946 | 180574 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2946 | 186 | CDD | REC_typeA_ARR | 12 | 147 | - | - | |
Cco05g2946 | 186 | ProSiteProfiles | Response regulatory domain profile. | 11 | 152 | IPR001789 | GO:0000160(InterPro) | |
Cco05g2946 | 186 | SMART | REC_2 | 10 | 148 | IPR001789 | GO:0000160(InterPro) | |
Cco05g2946 | 186 | Pfam | Response regulator receiver domain | 75 | 144 | IPR001789 | GO:0000160(InterPro) | |
Cco05g2946 | 186 | SUPERFAMILY | CheY-like | 9 | 144 | IPR011006 | - | |
Cco05g2946 | 186 | Gene3D | - | 11 | 183 | - | - | |
Cco05g2946 | 186 | MobiDBLite | consensus disorder prediction | 167 | 186 | - | - | |
Cco05g2946 | 186 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 9 | 176 | IPR045279 | GO:0009736(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0785 | Cco-Chr1:8246308 | Cco05g2946 | Cco-Chr5:36923275 | 1.00E-51 | dispersed | |
Cco05g2760 | Cco-Chr5:35446651 | Cco05g2946 | Cco-Chr5:36923275 | 3.40E-38 | dispersed | |
Cco05g2946 | Cco-Chr5:36923275 | Cco10g1598 | Cco-Chr10:29261022 | 1.30E-50 | dispersed | |
Cco05g2946 | Cco-Chr5:36923275 | Cco06g1869 | Cco-Chr6:28929583 | 5.00E-42 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59417 | PF00072 | Response_reg | 3.70E-20 | CL0304 | Cco | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2946 | K14492 | - | csv:101207245 | 280.796 |