Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2958 ATGCCCTTGGTTTCCTTACCTTGCAGTATTACAGAGAACCTCAAAGTTTATGCCATGACTGATGTCAGTCCAAGGACTGATATTTCCACTGATGTCGACACCGATGAAAAAAACCAGAGGCTCGATATGCTTCAACGGAATGTTGTGGCTTCTGATTCCAGTGATAGAACAAAAGATAAGTCTGATCAGAAGACTCTACGTAGGCTTGCACAGAATCGTGAAGCTGCCAGAAAAAGCCGACTGCGAAAAAAAGCATATGTCCAACAGCTGGAGAGTAGTCGTTTAAAGTTGACCCAACTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATCTTCATATCAAGCTCAGGAGATCAGGCCCATTCGATGGCTGGAAATGGGGCCATAGCATTTGATGTGGAATATGCCCGTTGGTTGGAAGAACAAAACAAGCAGATCAATGAACTGAGAGCAGCAGTAAACTCTCATGCAAGTGATACTGAACTTCGAATGATTGTCGATGGCATATTGGCTCATTATGATGAGGTTTTTCGGCTAAAGGGTGTCGCTGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACACCTGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCAGAGCTCCTAAAGCTTCTTGTCAATCAATTAGAGCCCCTCACAGAACAGCAGTTGATGGGCATATCCAACTTGCAGCAGTCCTCCCAACAGACTGAAGATGCATTGTCACAAGGCATGGAAGCGTTGCAACAATCGTTGGCTGAGACGTTATCCAGTGGATCTCTTGGCTCCTCGAATATGTCTGGCAATGTGGCAAATTATATGGGTCAAATGGCCACAGCCATGGGTAAACTTGGGACCCTTGAGGGGTTTATTCGCCAGGCTGACAATCTACGGCAACAAACACTGCAACAAATGCATCGGATTTTGACAATTCGTCAGTCAGCTCGTGCACTTCTTGCAATTCATGATTACTTCTCCAGACTACGAGCCCTTAGTTCCCTTTGGCTTGCTCGCCCAAAAGAGTGA 1050 45.9 MPLVSLPCSITENLKVYAMTDVSPRTDISTDVDTDEKNQRLDMLQRNVVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMAGNGAIAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMIVDGILAHYDEVFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLMGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNMSGNVANYMGQMATAMGKLGTLEGFIRQADNLRQQTLQQMHRILTIRQSARALLAIHDYFSRLRALSSLWLARPKE 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37094592 37098712 + CcPI632755_05g029580.1 Cco05g2958 180586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2958 349 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 67 82 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2958 349 ProSiteProfiles DOG1 domain profile. 129 346 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cco05g2958 349 Pfam bZIP transcription factor 64 104 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2958 349 CDD bZIP_HBP1b-like 64 116 - -
Cco05g2958 349 Pfam Seed dormancy control 146 221 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cco05g2958 349 Coils Coil 83 110 - -
Cco05g2958 349 Gene3D - 63 115 - -
Cco05g2958 349 PANTHER TRANSCRIPTION FACTOR TGA9 38 349 - -
Cco05g2958 349 SMART brlzneu 60 123 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2958 349 SUPERFAMILY Leucine zipper domain 64 107 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2958 349 FunFam BZIP family transcription factor 63 112 - -
Cco05g2958 349 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 62 106 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g2958 349 Coils Coil 140 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2958 Cco-Chr5:37094592 Cco08g1226 Cco-Chr8:23976270 3.60E-142 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59421 PF14144 DOG1 5.40E-33 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2958 K14431 - csv:101216885 592.038