Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2958 | ATGCCCTTGGTTTCCTTACCTTGCAGTATTACAGAGAACCTCAAAGTTTATGCCATGACTGATGTCAGTCCAAGGACTGATATTTCCACTGATGTCGACACCGATGAAAAAAACCAGAGGCTCGATATGCTTCAACGGAATGTTGTGGCTTCTGATTCCAGTGATAGAACAAAAGATAAGTCTGATCAGAAGACTCTACGTAGGCTTGCACAGAATCGTGAAGCTGCCAGAAAAAGCCGACTGCGAAAAAAAGCATATGTCCAACAGCTGGAGAGTAGTCGTTTAAAGTTGACCCAACTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATCTTCATATCAAGCTCAGGAGATCAGGCCCATTCGATGGCTGGAAATGGGGCCATAGCATTTGATGTGGAATATGCCCGTTGGTTGGAAGAACAAAACAAGCAGATCAATGAACTGAGAGCAGCAGTAAACTCTCATGCAAGTGATACTGAACTTCGAATGATTGTCGATGGCATATTGGCTCATTATGATGAGGTTTTTCGGCTAAAGGGTGTCGCTGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACACCTGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCAGAGCTCCTAAAGCTTCTTGTCAATCAATTAGAGCCCCTCACAGAACAGCAGTTGATGGGCATATCCAACTTGCAGCAGTCCTCCCAACAGACTGAAGATGCATTGTCACAAGGCATGGAAGCGTTGCAACAATCGTTGGCTGAGACGTTATCCAGTGGATCTCTTGGCTCCTCGAATATGTCTGGCAATGTGGCAAATTATATGGGTCAAATGGCCACAGCCATGGGTAAACTTGGGACCCTTGAGGGGTTTATTCGCCAGGCTGACAATCTACGGCAACAAACACTGCAACAAATGCATCGGATTTTGACAATTCGTCAGTCAGCTCGTGCACTTCTTGCAATTCATGATTACTTCTCCAGACTACGAGCCCTTAGTTCCCTTTGGCTTGCTCGCCCAAAAGAGTGA | 1050 | 45.9 | MPLVSLPCSITENLKVYAMTDVSPRTDISTDVDTDEKNQRLDMLQRNVVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMAGNGAIAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMIVDGILAHYDEVFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLMGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNMSGNVANYMGQMATAMGKLGTLEGFIRQADNLRQQTLQQMHRILTIRQSARALLAIHDYFSRLRALSSLWLARPKE | 349 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 37094592 | 37098712 | + | CcPI632755_05g029580.1 | Cco05g2958 | 180586 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2958 | 349 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 67 | 82 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2958 | 349 | ProSiteProfiles | DOG1 domain profile. | 129 | 346 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cco05g2958 | 349 | Pfam | bZIP transcription factor | 64 | 104 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2958 | 349 | CDD | bZIP_HBP1b-like | 64 | 116 | - | - | |
Cco05g2958 | 349 | Pfam | Seed dormancy control | 146 | 221 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cco05g2958 | 349 | Coils | Coil | 83 | 110 | - | - | |
Cco05g2958 | 349 | Gene3D | - | 63 | 115 | - | - | |
Cco05g2958 | 349 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 38 | 349 | - | - | |
Cco05g2958 | 349 | SMART | brlzneu | 60 | 123 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2958 | 349 | SUPERFAMILY | Leucine zipper domain | 64 | 107 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2958 | 349 | FunFam | BZIP family transcription factor | 63 | 112 | - | - | |
Cco05g2958 | 349 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 62 | 106 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g2958 | 349 | Coils | Coil | 140 | 160 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2958 | Cco-Chr5:37094592 | Cco08g1226 | Cco-Chr8:23976270 | 3.60E-142 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59421 | PF14144 | DOG1 | 5.40E-33 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2958 | K14431 | - | csv:101216885 | 592.038 |