Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2969 ATGGATCAATTTTCCAAAGACCTCGACAAGGAAATCTGCAACGCGGAGAAATTTGAGAGAGAAGAAGAAGACGACGACGGCGACGAGGAGCAAGAAGAGGGACAAGACGACTGGGACGATTGGAATGCAGACGAGGAAGAAGGAGAAGAAGCATTTGATTCGAATTTTCTGTGTCTGTTCTGCAACTCAAAGTATAATCACTGCGACACTCTGTTCAACCATTGCAACTCCGTCCACTATTTCGATTTTCACAGCATCAGAAGGGCTCTGGGTTTAGACTTCTATGGTTCCTTCAAAATTATCAACTACATACGATCTCAGGTAGCAGATAATAGGTGCTGGAGCTGTGGTCTCTCGTGTAAATCAAACCAGGATTTACAGAACCATTTACACAAAATTTTAAATCTCGATGACATAAAGGCTCTTTGGGATGATGATAAATATCTAAAACCCTTCAGGCAAGATGATCCCCTCCTGTACAGTTTTATAGAAGACGAGGAGGATGATTATGAAATGACTAGAGAAAATCTTCCATTTCATCCAAACCAAAACAAAGAAAATGGAGTGGAAGATTGTAGCTCTACTTCACATGGTTATTTGAATGCTCCAAGCAACTTAGAGGGCGAGATTGAGAATACTGTGAAAACCACGGAGACTTTGGGGTTGAAAGATGAGATGCAGGAAGACATTCAATTTAAATTAGCCAGACGGAATTTTGATAGAAAGAATATAAAAAATGCAAATGAAAGTTACTTCGGTTCATATAGCTCTTTTGGCATACACAAAGAGATGTTAAGCGACAAGGTCAGAATGGAAGCTTATATGGAGGCGATTTTGCAAAATCCATCTCTGTTCCACAATGCTGCTGTGATGGATGTAGGCTGTGGAACAGGCATACTTAGTCTTTTTGCTGCAAAAGCAGGTGCATCAAGAGTTATTGCAGTTGAAGCGAGTGAAAAGATGGCAGCAGTGGCCACCCAAATTGCAAAAGACAATGGCCTCTGGTGGAACAGGAAACAAACTAGAGATTGTGACATGTCAAGTGGGACTATAGAAGTGGTTCATGGTATGGTAGAAGAACTCGATAAGAACATAGAGATTGCGCCTCACAGTGTTGACGTATTATTGAGTGAATGGATGGGCTATTGCTTGTTGTACGAATCAATGCTCAGCTCAGTACTCTTTGCAAGGGATCGGTGGTTGAAGCCTGGAGGTGCAATCTTACCAGATACAGCCACAATTCTTGTTGCTGGATTTGGAGTTGGTGGAACTAGTCTTCCATTTTGGGAAAATGTGTATGGTTTTAGAATGTCTTGTGTAGGGAAGGAACTTGTAGAAGATGCTGCCAACACTCCCATCGTTGATATTGTGGATGCTAATGATTTAGTAACTAGTCCTGCAATCCTCCATACTTTCGATCTAGCAACCATGCATCCTGATGAAGTAGACTTCACTGCAAGTACCGAGTTGGAACCAAATTCACATGATCCTTCAAACTCAAATAGTGTTGAAGTTGAAGCATCTCGGTGTCATGGAGTTGTCCTATGGTTTGAAACTGGTTTTACAAGCAGATTTTGCAAGGAATCACCGGCTGTTCTGTCTACATCTCCATACACTCCCAAAACTCACTGGTCTCAAACCATATTAACCTTCAGAGAGCCGGTTGCTATAACATCTAGAAAGTCAAGAACCAACATATCAGCACCAGTAGGTAGCCATGCCTGCCCTGCTGTCAAAGTTCATTTGCGTCTTAGCATTGCCCGTGCGCCTGAACATCGAAGCATTGACATTTCACTAGAGACTACTGGGATCGCTGGTGATGGTAGGAAGCACCACTGGCCTGTACAGCTGTTCACACTAAGATAG 1866 42.44 MDQFSKDLDKEICNAEKFEREEEDDDGDEEQEEGQDDWDDWNADEEEGEEAFDSNFLCLFCNSKYNHCDTLFNHCNSVHYFDFHSIRRALGLDFYGSFKIINYIRSQVADNRCWSCGLSCKSNQDLQNHLHKILNLDDIKALWDDDKYLKPFRQDDPLLYSFIEDEEDDYEMTRENLPFHPNQNKENGVEDCSSTSHGYLNAPSNLEGEIENTVKTTETLGLKDEMQEDIQFKLARRNFDRKNIKNANESYFGSYSSFGIHKEMLSDKVRMEAYMEAILQNPSLFHNAAVMDVGCGTGILSLFAAKAGASRVIAVEASEKMAAVATQIAKDNGLWWNRKQTRDCDMSSGTIEVVHGMVEELDKNIEIAPHSVDVLLSEWMGYCLLYESMLSSVLFARDRWLKPGGAILPDTATILVAGFGVGGTSLPFWENVYGFRMSCVGKELVEDAANTPIVDIVDANDLVTSPAILHTFDLATMHPDEVDFTASTELEPNSHDPSNSNSVEVEASRCHGVVLWFETGFTSRFCKESPAVLSTSPYTPKTHWSQTILTFREPVAITSRKSRTNISAPVGSHACPAVKVHLRLSIARAPEHRSIDISLETTGIAGDGRKHHWPVQLFTLR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37208525 37212764 + CcPI632755_05g029690.1 Cco05g2969 180597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2969 621 MobiDBLite consensus disorder prediction 18 41 - -
Cco05g2969 621 Gene3D - 412 612 - -
Cco05g2969 621 Gene3D Vaccinia Virus protein VP39 240 409 IPR029063 -
Cco05g2969 621 FunFam Protein arginine N-methyltransferase 6 244 409 - -
Cco05g2969 621 CDD AdoMet_MTases 290 408 - -
Cco05g2969 621 MobiDBLite consensus disorder prediction 1 41 - -
Cco05g2969 621 Pfam Protein arginine N-methyltransferase 3, C2H2 zinc finger domain 87 151 IPR049482 -
Cco05g2969 621 Pfam Methyltransferase domain 290 405 IPR041698 -
Cco05g2969 621 Pfam Arginine methyltransferase oligomerization subdomain 411 559 - -
Cco05g2969 621 MobiDBLite consensus disorder prediction 1 17 - -
Cco05g2969 621 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 248 579 IPR025799 GO:0016274(InterPro)|GO:0018216(InterPro)
Cco05g2969 621 ProSitePatterns Zinc finger C2H2 type domain signature. 58 79 IPR013087 -
Cco05g2969 621 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 219 602 IPR025799 GO:0005634(PANTHER)|GO:0016274(InterPro)|GO:0018216(InterPro)
Cco05g2969 621 SUPERFAMILY beta-beta-alpha zinc fingers 34 173 IPR036236 -
Cco05g2969 621 Coils Coil 1 21 - -
Cco05g2969 621 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 254 559 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1632 Cco-Chr3:30994688 Cco05g2969 Cco-Chr5:37208525 4.50E-56 dispersed
Cco05g2969 Cco-Chr5:37208525 Cco06g1251 Cco-Chr6:22538668 4.90E-33 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2969 K11436 - csv:101215999 1056.97