Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2970 ATGATGGCTTGTGCTTCACAGGCGCTGATTGCTGCAAATTCATGCTCGTTTCCGAGCCATAGAATCATTAGAAAATCTCAGAGACTCTTCAATCAAAGTGCTTCCAATCTAGTTTTCACGGTCAGAGCTTCATCTGAAGATTCCGAATGCAATGTCGACGAATGTGCTCCAGATAAAGAGGTGGGGAAAATAAGTATGGAATGGCTAGCTGGGGAGAAAACTAAAGTGGTTGGGACATACCCACCGACGAAAAAAGGGTGGACTGGCTACGTAGAGAAGGACACTGCAGGACAAACAAATATATATTCCGTCGAACCAGTAGTTTATGTAGCAGAAAGTGCTATAAGCTCGGGGACTGCAGGTTCTTCTTCTGAAGGAGCTGAGAACACACTGGCAATTGCTGGTGGAATGGCACTCATTGCGGTTGCTGCAGCTTCATCTATACTGCTTCAAGTTGGTAAGAAACCACCTGAAGTGAAAACCGTTGAATACACTGGACCCTCACTCAGTTACTATATTAACAAGTTCAATACACGAGAAATTGTCCAACAACCGGTACAAAGTGAACCCGAATCGTCCTCTCAAGTCGACAGCGTCGCTCCTGAAGTAACGGAGATTCAAATTCAATCCGACATTGCTGCTCCTGAAGTAACGGATATTCAAGTTGAGTCCCAAACGACAGAGCCATCCTCTTCGGCTGTAGCCAGTGTCTCGTGCACATTTAATATGGCCCCTCGGGCTCAAGCCCCCTTAATTAAGTTTCCACGGGGAAAGCCGGCCACTGGAAGGGTTTCTTTACTGGATCTGCAAGTTGGTGCATTTTTTGCTCCCTCTGCCGTCGAGTGCTGTGGTGATTTTCGTACTATGAATTCCTTGGTTACTCCTAGCACTGTACTCATGGAAAGCGTGGAGGAAACGAAGCCATCAGCTACAAATAGTTGCCATACTTATGGCGGAACAAACACTGCAGACGTTCAATTTTCAGAATTGTGTCAGAATGGACTACATCTGAATGAGAATTGTTGTAATCAAGCATTAAAGTTATTTAGAGAGACGAAGCACCTTTTGGTTGCAAATATATCAGCAATCGGGAGTGGAATTCCTGAAGAAGCCGAACGTTTTTGGTCTGCCTTTGTTTTATATACTATGAAGAGGCTGAGAGATAAGAATTCAGAGAGTTCGCATCAGGGATCTGAGAACAACAGCTTCACTTTATGCCACATACTGAGAGTTTGCAAGCTGAACATCGTGGAATTTTTTAAAGAGCTGCCGCAGTTTGTTGTTAAAGCTGGTCCAGTATTAAGTAATCTCTATGGTGCAGACTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAGGCTAACTTCGTGCATTTGAGCCTCTTAAGCAAGTATTATAAGCGTGTCTACCGAGAGTTCTTCTCCACCAATGATGCTAATGTTGAAAAGCAGTCAGCTATATCCTGCCCCACCGGTTACTTATCTGATTACCATCGCTTTGGATGGTTATTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTAATTCTTCATATTCCAGTTCGTTTCAGAAACTTCAGCATTCTTGACTCTGAACGCTTTGTTAAGAAAGGTGGAAAAGGAGTGGATCTGCTTGGATCACTTTGTAATGTCTATGACACCTCAGAGGAAGAACTGAAGGAAGTTATGGAGAAGGCAAATAGTTTGATTGAAGATATTTTGAAGAAGAAGCCTCGTTTGGCTTCTGAGTGTAACAGTAAAAGCTTGGAGAATATTGACACTGAGGGTTTGATATACTTTGAAGGCTTAATGGAGGAGTCATCTCTTTCATACAGTTTAGAAATTCTTGAAAAGGACTATGAAGATGCAATTTGTAATAAAGGTGAGCTTGATGAGCGGATTTTTGTTAGTGACGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCAGCAGGTGCTGTTACAATGGGTGGCATCAAGAGGAAGTTTGACTCAGTGTGCTCACCTGCAAGGACAATAACCAGTCCAATGTCTCCACTTCGCTCTCCTGCTTCGCATGCCAATGGCACTCTTAATAGTGGTAATGCAAAACTTGCTGCCACACCTGTTAGCACAGCGATGACAACAGCAAAGTGGCTCAGAACTGTTATTTCCCCACTTCCAGCAAAACCTTCAGCAGAGATGGAGCGCTTTTTGGCTTCATGTGATAGGGATGTAACTAATGATGTAGTCCGTAGGGCGCATATTATACTTGAGGCCATATTTCCAAATAGTGCTCTAGGAGAGCGCTGTATAGCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATCTGGGCAGAACAGCGACGACTAGAAGCACTGAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTTACTAATGAGAGGTTCCACAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCAACTCATAAAACTGTTACAATGTTGTTTCCTGCAGTAATGGAAAGAACTGGCATAACAGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTCATTCGACATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCTTTGGAAGAACGACTTTTAGAGAGTATGGTATGGGAAAAAGGTTCATCAATGTATAACTCCCTGATTGTTGCTAAACCTGCCCTTGCTGCAGAAATTAATCGTCTGGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCCATTGCAATTCAAATTAACTTTTCTGGCATGGGGGTATCAACCATGCCTAATCTGCAAAAGCATGAGAGTTTGCCAGGTCAGAATGGGGATATAAGATCGCCCAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCGGTGAAGGACCGACTCATGGCTTTCAGTAGTATTAAGTCTAAGCTTCTGCCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCTGGAGGTGGTGGAGAAACGTGTGCTGAAACTGGAATTAACATTTTCTTTAGCAAGATCATCAAGTTGGCTGCTGTAAGAGTCAACGGCATGGTGGAAAGGTTGCAGTTATCTCATCTGATCAGGGAGAATGTCTACTGCCTTTTCCAGCAGATACTCAGTCAAAAGACATCACTATTATTTAACCGTCACATCGACCAGATCATCCTTTGTTGTTTCTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATATACAACTACAGGAAGCAACCGCAATGTAAACCACAAGTCTTCCGCAATGTGTTTGTTGACTGGTCTTCAGCACGTCGTAATGGGAGATCAGGACAGGATCATGTGGATATAATTACCTTCTACAATGAAATATTTATTCCTTCTGTGAAACCTTTGCTTGTTGAGATTGGCCCGGCTGGATCAACCATGAAAACTGACAGGGTTCCTCAAGTCAACAACAACAGCGATGCACCATGTCCTGGATCACCTAAGATATCTCCTTTTCCAAGTCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCTCCATTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCGAAAAGCTACTACGCTTGCGTTGGAGAGAGCACCCATGCGTTTCAAAGCCCTTCAAAAGACCTTACTGCCATAAACAACCGTTTGAATGGTACGCGGAAACTTCGAGGCACACTAAATTTTGACGACGCGGACGTTGGTTTAGTAAGTGATTCCCTGGTGGCTAACAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCTTCAGGTGCACCTATTAAATCTGAACAACCTGATTCTTAA 3966 43.02 MMACASQALIAANSCSFPSHRIIRKSQRLFNQSASNLVFTVRASSEDSECNVDECAPDKEVGKISMEWLAGEKTKVVGTYPPTKKGWTGYVEKDTAGQTNIYSVEPVVYVAESAISSGTAGSSSEGAENTLAIAGGMALIAVAAASSILLQVGKKPPEVKTVEYTGPSLSYYINKFNTREIVQQPVQSEPESSSQVDSVAPEVTEIQIQSDIAAPEVTDIQVESQTTEPSSSAVASVSCTFNMAPRAQAPLIKFPRGKPATGRVSLLDLQVGAFFAPSAVECCGDFRTMNSLVTPSTVLMESVEETKPSATNSCHTYGGTNTADVQFSELCQNGLHLNENCCNQALKLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYTMKRLRDKNSESSHQGSENNSFTLCHILRVCKLNIVEFFKELPQFVVKAGPVLSNLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTNDANVEKQSAISCPTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHIPVRFRNFSILDSERFVKKGGKGVDLLGSLCNVYDTSEEELKEVMEKANSLIEDILKKKPRLASECNSKSLENIDTEGLIYFEGLMEESSLSYSLEILEKDYEDAICNKGELDERIFVSDEDSLLGSGSLSAGAVTMGGIKRKFDSVCSPARTITSPMSPLRSPASHANGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVMERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALAAEINRLGLLAEPMPSLDAIAIQINFSGMGVSTMPNLQKHESLPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLMAFSSIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKIIKLAAVRVNGMVERLQLSHLIRENVYCLFQQILSQKTSLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGSTMKTDRVPQVNNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS 1321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37215146 37226979 - CcPI632755_05g029700.1 Cco05g2970 180598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2970 1321 MobiDBLite consensus disorder prediction 1183 1215 - -
Cco05g2970 1321 FunFam Retinoblastoma-related protein 1 720 908 - -
Cco05g2970 1321 SUPERFAMILY Cyclin-like 725 920 IPR036915 -
Cco05g2970 1321 Gene3D - 496 654 - -
Cco05g2970 1321 FunFam Retinoblastoma-related protein 1 496 654 - -
Cco05g2970 1321 CDD CYCLIN_AtRBR_like 1042 1173 - -
Cco05g2970 1321 MobiDBLite consensus disorder prediction 690 709 - -
Cco05g2970 1321 Pfam Domain of unknown function (DUF3452) 397 535 IPR024599 -
Cco05g2970 1321 SMART DUF3452_2 386 535 IPR024599 -
Cco05g2970 1321 SMART RB_A_2 717 918 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Cco05g2970 1321 Coils Coil 569 593 - -
Cco05g2970 1321 Gene3D - 720 908 - -
Cco05g2970 1321 FunFam Retinoblastoma-related protein 1 992 1202 - -
Cco05g2970 1321 Gene3D - 1003 1195 - -
Cco05g2970 1321 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 307 1318 IPR028309 GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER)
Cco05g2970 1321 Pfam Retinoblastoma-associated protein B domain 1042 1169 IPR002719 GO:0005634(InterPro)|GO:0051726(InterPro)
Cco05g2970 1321 Coils Coil 630 650 - -
Cco05g2970 1321 Pfam Retinoblastoma-associated protein A domain 717 918 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Cco05g2970 1321 SUPERFAMILY Cyclin-like 1040 1209 IPR036915 -
Cco05g2970 1321 MobiDBLite consensus disorder prediction 1184 1199 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59422 PF01858 RB_A 1.90E-63 CL0065 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2970 K04681 - csv:101219810 1900.18