Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0006 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGCGGAGGAGGCGGTGGTGCTCGAATCTTAGCCGATTTACCTTACACAAATAACTCCACCACCAACGCCAACAATAACCCCACCGGCGGCATCGGCGGCGGCGGAAATATGTCCTCCGGCGCAATCGCTCCGCCGCGCCTCATCACTCAATCTCTCACCAAATCGATGTTCAACTCCCCCGGACTCTCTCTCGCTCTTACGAACATGGACGGCGGGCAGGGGGATTTAGCTGCCCGACTGCCCGAGGGTTTCGAGCATAATGTTGGAAGAAGAGGCAGAGAAGAAGAACACGAGAGTAGATCTGGGAGTGACAACATGGACGGCGGCTCCGGTGATGACCAGGACGCCGCCGACAACCCTCCGAGGAAGAAACGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTCTTTAAAGAGTGCCCTCATCCTGATGAGAAGCAACGGCTCGAGTTGAGTCGGAGGCTGTGTTTAGAAACTAGGCAAGTTAAATTTTGGTTCCAAAATCGGAGGACCCAAATGAAGACCCAATTGGAACGCCATGAGAATACTTTACTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTCGAGATGCTATGAGGAACCCAATCTGTTCGAACTGTGGTGGTCCAGCAATCATCGGCGAAATCTCGCTGGAAGAACAGCAGTTGAGGATTGAAAATGCTCGGTTGAAGGATGAATTGGACCGGGTTTGTGCGCTCGCTGGGAAGTTTCTTGGCAGGCCGATTTCGTCGCTGGCTAACTCAATTGCACCTCCATTGCCGAGCTCGAGTCTGGAACTGGGAGTTGGGAGTAATGGGTTTGGGAGTTTGACCATGGCGACGTCAATGCCTATTGGGCCTGATTTCGGAGGTGGGTTGTCAGGCAATCTGGCTGTCATTCAGCCACCTGGGAGGCCAACACCGGGGATGGGACTTGATCGTTCAGTTGAGCGATCTATGCTACTGGAGCTTGCTTTGGCTGCCATGGATGAATTGGTCAAAATGGCACAGACGGACGAGCCACTTTGGATTGGGAGCTTGGAAGGTGGGAGAGAAATACTGAACCAGGAGGAGTACATGAGGACATTCACTCCTTGCATAGGTATGAAACCAAACGGTTTTGTCACCGAGGCGTCGAGAGAAACTGGCATGGTGATCATCAATAGCTTGGCTCTCGTGGAGACATTGATGGACTCGAATCGATGGGCAGAGATGTTTCCGTGTATGATTGCTCGAACCACGACCACTGATGTGATCTCCAGTGGCATGGGGGGAACGAGGAATGGTGCACTTCAACTGATGCACGCAGAGCTTCAAGTGCTCTCGCCGTTGGTGCCAGTCCGGGAAGTCAATTTTCTGCGGTTTTGCAAGCAGCACGCCGAAGGGGTATGGGCAGTCGTCGATGTATCGGTCGATACCATGAGAGAGACTCCGACCAGTGGTGGTCCTTCATTTGGCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAACGGGTATTCCAAGGTTACGTGGGTGGAACATGCGGAGTACGATGATAGCCAAGTGCACCAGCTCTACCGTCCCCTACTCAGCTCTGGTATGGGCTTTGGAGCGCAACGGTGGGTTGCCACCCTTCAACGACAATGTGAATGCCTCGCCATCCTCATGTCATCCGCTGTACCAATCCGAGACCACGCCGCCATAACCGCAGGTGGGCGGCGGAGCATGCTGAAGCTAGCCCAGCGAATGACAGCGAACTTCTGCGCAGGTGTGTGTGCATCCACAGTGCACAAATGGAACAAGCTGAATGCTGGGAGCGTAGATGAGGACGTCCGTGTCATGACGCGGAAGAGTGTGGACGATCCTGGGGAGCCTCCGGGTATTGTGTTGAGCGCCGCTACGTCAGTGTGGCTCCCGGTATCTCCCCAACGGCTCTTTGATTTCCTTCGAGACGAGCGGCTGAGGAGTGAATGGGACATCCTATCCAACGGCGGCCCCATGCAGGAGATGGCCCATATTGCCAAAGGCCAAGATCATGGCAACTGCGTCTCTCTTTTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTCTACAAGAGACATGCATAGACGCGGCGGGATCGCTTGTGGTGTACGCGCCGGTGGACATTCCGGCAATGCACGTCGTGATGAACGGTGGCGATTCGGCTTACGTGGCACTTTTACCGTCAGGGTTTGCGATCGTGCCTGACGGGGCGGTGACAGTGACCAATGGGAGCAGTCCAAGTGGCGGGGAGGGTCCACAGAGTCAGAGAGCGACAGGCGGTGGGTCCCTCCTCACCGTCGCATTTCAGATCCTGGTGAATAGCCTCCCTACGGCCAAGCTGACCGTAGAATCGGTTGAAACGGTCAATAATCTCATATCTTGCACCGTCCAGAAAATCAAGGCCGCTCTTCAATGCGAAACCTGA 2511 54.32 MSFGGFLDGGGGGGGGGARILADLPYTNNSTTNANNNPTGGIGGGGNMSSGAIAPPRLITQSLTKSMFNSPGLSLALTNMDGGQGDLAARLPEGFEHNVGRRGREEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLAVIQPPGRPTPGMGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYMRTFTPCIGMKPNGFVTEASRETGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDTMRETPTSGGPSFGNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAVPIRDHAAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVTVTNGSSPSGGEGPQSQRATGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 87865 92690 - CcPI632755_06g000060.1 Cco06g0006 180606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0006 836 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco06g0006 836 Pfam Homeodomain 134 189 IPR001356 GO:0003677(InterPro)
Cco06g0006 836 CDD START_ArGLABRA2_like 337 567 - -
Cco06g0006 836 Gene3D - 121 207 - -
Cco06g0006 836 SMART START_1 342 568 IPR002913 GO:0008289(InterPro)
Cco06g0006 836 MobiDBLite consensus disorder prediction 95 114 - -
Cco06g0006 836 Coils Coil 185 217 - -
Cco06g0006 836 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677(InterPro)
Cco06g0006 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 112 835 IPR042160 -
Cco06g0006 836 SUPERFAMILY Bet v1-like 596 829 - -
Cco06g0006 836 Pfam START domain 342 568 IPR002913 GO:0008289(InterPro)
Cco06g0006 836 FunFam Homeobox-leucine zipper protein GLABRA 2 342 567 - -
Cco06g0006 836 CDD homeodomain 133 191 IPR001356 GO:0003677(InterPro)
Cco06g0006 836 SMART HOX_1 132 195 IPR001356 GO:0003677(InterPro)
Cco06g0006 836 Coils Coil 232 252 - -
Cco06g0006 836 MobiDBLite consensus disorder prediction 94 141 - -
Cco06g0006 836 SUPERFAMILY Homeodomain-like 116 191 IPR009057 -
Cco06g0006 836 FunFam Homeobox-leucine zipper protein HDG1 121 207 - -
Cco06g0006 836 SUPERFAMILY Bet v1-like 335 568 - -
Cco06g0006 836 ProSiteProfiles START domain profile. 333 571 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0186 Cco-Chr2:1784621 Cco06g0006 Cco-Chr6:87865 2.90E-213 dispersed
Cco03g0485 Cco-Chr3:5088180 Cco06g0006 Cco-Chr6:87865 2.00E-187 dispersed
Cco04g1995 Cco-Chr4:34122675 Cco06g0006 Cco-Chr6:87865 3.40E-190 dispersed
Cco05g1662 Cco-Chr5:23252715 Cco06g0006 Cco-Chr6:87865 1.00E-77 dispersed
Cco06g0006 Cco-Chr6:87865 Cco07g1389 Cco-Chr7:27966644 1.90E-149 dispersed
Cco01g1859 Cco-Chr1:31132874 Cco06g0006 Cco-Chr6:87865 3.90E-188 transposed
Cco05g1240 Cco-Chr5:11911439 Cco06g0006 Cco-Chr6:87865 1.70E-159 transposed
Cco09g1176 Cco-Chr9:11579859 Cco06g0006 Cco-Chr6:87865 1.40E-170 transposed
Cco05g0219 Cco-Chr5:1701386 Cco06g0006 Cco-Chr6:87865 1.30E-271 wgd
Cco05g0954 Cco-Chr5:8334654 Cco06g0006 Cco-Chr6:87865 3.30E-265 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59423 PF01852 START 2.50E-58 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0006 K09338 - csv:101222248 1536.55