Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0018 ATGGCCGATATTCAGAAACAAGAACTCGACGACGACGACGACTCTCCCCCCACCCATCTCCCTATCAATGACTCTGACTCCTCTCGAATCGACCTTCTTTCCCTTCCTCCTAAGCAGGAGCATCCCGATTCCGACGACTCCAACCTTCCCCCCTCCGGAATTCAGCTCCTCAAGTTCACTGCAGACATTGCTAAATCTGTCTCATCTCTCCCTCCCAAGAGAGCGTCTACCAAGGATCGCCACACCAAGGTCGAGGGCAGAGGCCGGAGAATCCGAATTCCGGCCACCTGTGCCGCGCGTATCTTCCAGTTGACTCGAGAGCTCGGCCACAAGTCCGACGGCGAAACTATTCGGTGGCTTCTCGAGCGGGCCGAGCCGGCTATCATCGCCGCTACTGGGACTGGTACCATTCCCGCTATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACCACTTCCTCTTCTAACCAAGATTCTGCCGATCCATCCGCGGCTAAGAAGCGGCGTAAGCGCCCCGCTAACAGTGACTACGTTGACGTAAACGACGCCCTCTCCGTCTCCGTCTCCGTCTCCGCCTCGAACGGCATCGTTCAGGCCGGTACCGTTGCCGGTTCCCCCGCCGTCCAACACGCTTTTCCACCGGGGTTCGTTCCAGTGTGGGCCATCCCATCCAACGCCATAATTCCCGGGGCGGTTTTCATGGTACCATCCGTGGCATGTTCTTCCACGCGTCCACAGTTGTTCTCATTTCCGGCTCCGGCGGCGCCGCTCATCAACACGACGGCGCGGCCCATTTCTACCTTCCCGTCGAAGCCAGACACGTCTCACATTCAATCCAGCCCCACCAATCAAAGCTCCAGCACTTCAAGCTCCTCCGCTTCCAAGTCTCAATCCGTCATGGCGCCGATCTCGAGCTCTACCGTTCCAACGTCCGGAAAAACGACGACGCAGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCGTCAATTCATGTCTCGCTCGTCCTCAAAACATTGA 1035 56.81 MADIQKQELDDDDDSPPTHLPINDSDSSRIDLLSLPPKQEHPDSDDSNLPPSGIQLLKFTADIAKSVSSLPPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAAKKRRKRPANSDYVDVNDALSVSVSVSASNGIVQAGTVAGSPAVQHAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFPAPAAPLINTTARPISTFPSKPDTSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSTVPTSGKTTTQMLRDFSLEIYDKEERQFMSRSSSKH 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 190968 192002 + CcPI632755_06g000180.1 Cco06g0018 180618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0018 344 MobiDBLite consensus disorder prediction 1 53 - -
Cco06g0018 344 MobiDBLite consensus disorder prediction 151 178 - -
Cco06g0018 344 MobiDBLite consensus disorder prediction 164 178 - -
Cco06g0018 344 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 53 296 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cco06g0018 344 Pfam TCP family transcription factor 76 173 IPR017887 -
Cco06g0018 344 MobiDBLite consensus disorder prediction 265 317 - -
Cco06g0018 344 ProSiteProfiles TCP domain profile. 77 131 IPR017887 -
Cco06g0018 344 MobiDBLite consensus disorder prediction 1 19 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0018 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2708 Cco-Chr5:34968929 Cco06g0018 Cco-Chr6:190968 6.00E-28 dispersed
Cco06g0018 Cco-Chr6:190968 Cco06g1829 Cco-Chr6:28593417 6.90E-29 dispersed
Cco05g0931 Cco-Chr5:8143444 Cco06g0018 Cco-Chr6:190968 4.30E-47 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g0861 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.2e-68 255.0
Cco02g1531 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 1.9e-60 229.6
Cco06g0018 . 59 343 TCP Transcription Factor Family AT2G45680 53.8 2.5e-66 249.6
Cco05g2708 . 63 157 TCP Transcription Factor Family AT3G47620 89.7 8.5e-41 165.2
Cco01g1830 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cco11g1390 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cco11g1390 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Cco05g1567 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.1e-60 229.2
Cco02g1531 . 9 255 TCP Transcription Factor Family AT5G08330 56.7 4.6e-64 241.5
Cco01g0861 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.6e-63 237.3
Cco11g1390 . 147 388 TCP Transcription Factor Family AT1G35560 50.4 1.7e-43 173.7
Cco07g1729 . 43 183 TCP Transcription Factor Family AT3G02150 58.8 5.8e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59425 PF03634 TCP 5.90E-30 No_clan Cco TF