Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0018 ATGGCCGATATTCAGAAACAAGAACTCGACGACGACGACGACTCTCCCCCCACCCATCTCCCTATCAATGACTCTGACTCCTCTCGAATCGACCTTCTTTCCCTTCCTCCTAAGCAGGAGCATCCCGATTCCGACGACTCCAACCTTCCCCCCTCCGGAATTCAGCTCCTCAAGTTCACTGCAGACATTGCTAAATCTGTCTCATCTCTCCCTCCCAAGAGAGCGTCTACCAAGGATCGCCACACCAAGGTCGAGGGCAGAGGCCGGAGAATCCGAATTCCGGCCACCTGTGCCGCGCGTATCTTCCAGTTGACTCGAGAGCTCGGCCACAAGTCCGACGGCGAAACTATTCGGTGGCTTCTCGAGCGGGCCGAGCCGGCTATCATCGCCGCTACTGGGACTGGTACCATTCCCGCTATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACCACTTCCTCTTCTAACCAAGATTCTGCCGATCCATCCGCGGCTAAGAAGCGGCGTAAGCGCCCCGCTAACAGTGACTACGTTGACGTAAACGACGCCCTCTCCGTCTCCGTCTCCGTCTCCGCCTCGAACGGCATCGTTCAGGCCGGTACCGTTGCCGGTTCCCCCGCCGTCCAACACGCTTTTCCACCGGGGTTCGTTCCAGTGTGGGCCATCCCATCCAACGCCATAATTCCCGGGGCGGTTTTCATGGTACCATCCGTGGCATGTTCTTCCACGCGTCCACAGTTGTTCTCATTTCCGGCTCCGGCGGCGCCGCTCATCAACACGACGGCGCGGCCCATTTCTACCTTCCCGTCGAAGCCAGACACGTCTCACATTCAATCCAGCCCCACCAATCAAAGCTCCAGCACTTCAAGCTCCTCCGCTTCCAAGTCTCAATCCGTCATGGCGCCGATCTCGAGCTCTACCGTTCCAACGTCCGGAAAAACGACGACGCAGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCGTCAATTCATGTCTCGCTCGTCCTCAAAACATTGA 1035 56.81 MADIQKQELDDDDDSPPTHLPINDSDSSRIDLLSLPPKQEHPDSDDSNLPPSGIQLLKFTADIAKSVSSLPPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAAKKRRKRPANSDYVDVNDALSVSVSVSASNGIVQAGTVAGSPAVQHAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFPAPAAPLINTTARPISTFPSKPDTSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSTVPTSGKTTTQMLRDFSLEIYDKEERQFMSRSSSKH 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 190968 192002 + CcPI632755_06g000180.1 Cco06g0018 180618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0018 344 MobiDBLite consensus disorder prediction 1 53 - -
Cco06g0018 344 MobiDBLite consensus disorder prediction 151 178 - -
Cco06g0018 344 MobiDBLite consensus disorder prediction 164 178 - -
Cco06g0018 344 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 53 296 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cco06g0018 344 Pfam TCP family transcription factor 76 173 IPR017887 -
Cco06g0018 344 MobiDBLite consensus disorder prediction 265 317 - -
Cco06g0018 344 ProSiteProfiles TCP domain profile. 77 131 IPR017887 -
Cco06g0018 344 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2708 Cco-Chr5:34968929 Cco06g0018 Cco-Chr6:190968 6.00E-28 dispersed
Cco06g0018 Cco-Chr6:190968 Cco06g1829 Cco-Chr6:28593417 6.90E-29 dispersed
Cco05g0931 Cco-Chr5:8143444 Cco06g0018 Cco-Chr6:190968 4.30E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59425 PF03634 TCP 5.90E-30 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0018 - - - 0.0