Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0018 | ATGGCCGATATTCAGAAACAAGAACTCGACGACGACGACGACTCTCCCCCCACCCATCTCCCTATCAATGACTCTGACTCCTCTCGAATCGACCTTCTTTCCCTTCCTCCTAAGCAGGAGCATCCCGATTCCGACGACTCCAACCTTCCCCCCTCCGGAATTCAGCTCCTCAAGTTCACTGCAGACATTGCTAAATCTGTCTCATCTCTCCCTCCCAAGAGAGCGTCTACCAAGGATCGCCACACCAAGGTCGAGGGCAGAGGCCGGAGAATCCGAATTCCGGCCACCTGTGCCGCGCGTATCTTCCAGTTGACTCGAGAGCTCGGCCACAAGTCCGACGGCGAAACTATTCGGTGGCTTCTCGAGCGGGCCGAGCCGGCTATCATCGCCGCTACTGGGACTGGTACCATTCCCGCTATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACCACTTCCTCTTCTAACCAAGATTCTGCCGATCCATCCGCGGCTAAGAAGCGGCGTAAGCGCCCCGCTAACAGTGACTACGTTGACGTAAACGACGCCCTCTCCGTCTCCGTCTCCGTCTCCGCCTCGAACGGCATCGTTCAGGCCGGTACCGTTGCCGGTTCCCCCGCCGTCCAACACGCTTTTCCACCGGGGTTCGTTCCAGTGTGGGCCATCCCATCCAACGCCATAATTCCCGGGGCGGTTTTCATGGTACCATCCGTGGCATGTTCTTCCACGCGTCCACAGTTGTTCTCATTTCCGGCTCCGGCGGCGCCGCTCATCAACACGACGGCGCGGCCCATTTCTACCTTCCCGTCGAAGCCAGACACGTCTCACATTCAATCCAGCCCCACCAATCAAAGCTCCAGCACTTCAAGCTCCTCCGCTTCCAAGTCTCAATCCGTCATGGCGCCGATCTCGAGCTCTACCGTTCCAACGTCCGGAAAAACGACGACGCAGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCGTCAATTCATGTCTCGCTCGTCCTCAAAACATTGA | 1035 | 56.81 | MADIQKQELDDDDDSPPTHLPINDSDSSRIDLLSLPPKQEHPDSDDSNLPPSGIQLLKFTADIAKSVSSLPPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAAKKRRKRPANSDYVDVNDALSVSVSVSASNGIVQAGTVAGSPAVQHAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFPAPAAPLINTTARPISTFPSKPDTSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSTVPTSGKTTTQMLRDFSLEIYDKEERQFMSRSSSKH | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 190968 | 192002 | + | CcPI632755_06g000180.1 | Cco06g0018 | 180618 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0018 | 344 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Cco06g0018 | 344 | MobiDBLite | consensus disorder prediction | 151 | 178 | - | - | |
Cco06g0018 | 344 | MobiDBLite | consensus disorder prediction | 164 | 178 | - | - | |
Cco06g0018 | 344 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 53 | 296 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Cco06g0018 | 344 | Pfam | TCP family transcription factor | 76 | 173 | IPR017887 | - | |
Cco06g0018 | 344 | MobiDBLite | consensus disorder prediction | 265 | 317 | - | - | |
Cco06g0018 | 344 | ProSiteProfiles | TCP domain profile. | 77 | 131 | IPR017887 | - | |
Cco06g0018 | 344 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2708 | Cco-Chr5:34968929 | Cco06g0018 | Cco-Chr6:190968 | 6.00E-28 | dispersed | |
Cco06g0018 | Cco-Chr6:190968 | Cco06g1829 | Cco-Chr6:28593417 | 6.90E-29 | dispersed | |
Cco05g0931 | Cco-Chr5:8143444 | Cco06g0018 | Cco-Chr6:190968 | 4.30E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59425 | PF03634 | TCP | 5.90E-30 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0018 | - | - | - | 0.0 |