Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0019 ATGGATAATTACGGCTCTTCACCTTCGTATCCATACCACAATCCTTACGCATACCCTCGTCCAGTTGCTCCTCAATATCCACCTCCTTCTCAATATCCTCCTCCTTCTCAATATCCTCCTCCTCCTCATTATACACATCCAAATTCAGATCCCTATGCTCGTCCTGCTTACCCTTATCCCTATAATCCTTCACATGCCTCTCCATTTGCATATCCCCCACCCCCATCTCATTCTGGCCTAGTAGAGTATTTTCCACACCCACCTCCACATTCTAGCCCTCTACCTTACCCATATCCTTACTCTGATGCCTCATCTACTGGTGGTGCTAGGCCATCCATTCAATATCATAACAATTTCCAACCTGGTTCATCCCCATATCGGTATCAAGAATCTAATACATACCCTCCACCAGAAAGTCAATACCCACCACCCCCTTCACGAGTGAATAGCTTCTCTGGCCACTATAGGAACGATAGCACTGATTCTGCATCGTCTGTCTCTTCTGCATACCCACCTCTGGATGACCTTTTGTGCAATGTACATTTGTCTGATCATCAACCAACTGCTCCTGCATCACCTCCTGCACCTGCTGCAGCACCTGCACCTGCACCTGCACAGCCTTCAGCTTCGTTATTGGCAAATTCACCTCAAAGTGCGAGATATGATCGGCGTGACCGATTTTATGGCTTTCCGAATTCATCCTTTTCTAGTTTTGACACGGGGAATTCAGATCAAATGGTTACATCCAAACAACCTTCATTTTCCCATTCAAGCTCATTCAGTGGGTCTCAACATAGTCAGAACTTGCAGATTGTTCCCTTGCATAGTAAAGCATCATTGAGAGTTTTGCTGTTGCATGGAAACTTAGAAATATGGGTTAATGAGGCCAAAAATCTTCCAAATATGGACATGTTTCACAAAACCTTAGGGGATATGTTTGCAAAATTACCTGGGAACATGAGCAACAAAATTGAAGGACGCGTGAGTCATAAGATCACTAGTGATCCTTATGTATCGATCAATGTAGCAAATGCAGTAATTGGGAGGACTTTTGTTATAAGCAACAATGAAAATCCTGTATGGAGGCAACATTTCTATGTTCCTGTTGCACATTATGCTGCTGAAGTAGTTTTTGTCGTTAAAGACAGTGATGTTGTTGGTTCACAGCTGATAGGAACGGTAGCAATTCCTGCAGAACAAATATATTCAGGGTCTATGGTTGAGGGAACCTTCCCAATCCTACTTGGTGGGAAGCCATGTAAACCTGGAGCAGCTCTAAGTATTTCTATTCAATATACCCCAATGGAGAGGCTTAGCACTTATCATCATGGAGTGGGAGCTGGCCCTGATTATCAGGGGGTTCCTGATACCTATTTCCCCCTCAGAAAGGGTGGAGCTGTCACTCTTTATCAAGATGCCCATGTTCCAGATGGGCACCTTCCAAATTTGATGCTTGATAATGGTATGTACTATGTACATGGGAAGTGTTGGCATGACATCTTTGATGCTGTACGTCAGGCTCGCAGGTTAATTTACATAACTGGGTGGTCGGTGTGGCACAAAGTGAAACTAGTTCGAGATACTAGCTATGGTACAGAGTGTACCCTTGGAGATCTGCTGAGGTCAAAGTCCCAGGAGGGAGTGAGAGTTTTGCTTCTTGTTTGGGACGATCCCACTTCTAGGAGCATTTTGGGTTATAAAACTGATGGTTTCATGCAAACCCATGATGAGGAAACTCGCCGTTTTTTCAAACACTCCTCTGTACAAGTGATACTTTGTCCTCGGATTGCTGGAAAACGACATAGTTGGGTTAAGCAAAAGGAAGTTGGAACTATATATACACACCATCAGAAAACAGTTATTGTGGATGCTGATGCTGGAAATAATAGAAGAAAGATCATAGCTTTTGTTGGAGGGCTTGATTTATGTGATGGGCGGTATGATACTCCATTACATCCCATATTTCGGACCCTTCAAACAGTACACAAGGATGATTACCACAATCCTACATACACGGGTAGCGTTGTTGGTTGTCCAAGAGAACCATGGCATGATCTACACAGCAAAATTGATGGTCCAGCTGCATATGATGTTTTGACTAACTTTGAGGAGCGATGGAGGAGAGCTTCAAAACCCCACGGGATAAAGAAGTTGAAATCATATGATGATGCTTTGCTGAGTATTGAAAGAATTCATGACATAATTGGAATTTCTGAAGCGTACTGCACTAATGAAAATGATCCTGAATCATGGCATGTCCAGATTTTTCGCTCAATTGATTCAACTTCTGTCAAAGATTTCCCAAAGGATCCAAAAGATGCCCCAAGCAAGAACCTCGTATGTGGAAAGAATGTGCTGATTGATATGAGTATACACACAGCATATGTGAAAGCCATTCGAGCTGCCCAACATTACATTTATATAGAGAACCAATATTTCATTGGATCATCCTTCAATTGGAATTCTAATAAAGATATAGGTGCCAACAATTTGATTCCGATGGAAATTGCGCTAAAGATTGCTGATAAAATAAGAGCAAATGAGAGGTTTGCTGCATATATTGTCATTCCCATGTGGCCTGAGGGTGTTCCAACCGCTGCTGCCACTCAGAGAATACTATTTTGGCAGCAAAAAACCATGCAAATGATGTATGAGGTCGTTTACAAGGCTTTGATGGAAGTTGGTCTTGAGGATGCATTCTCTCCACAAGACTATTTGAACTTCTTCTGTCTGGGAAATCGTGAGGCTATGGATGGAAATGATCCTTCATGTTCTGGAAGTCCTAATGCAGAAAACACCCCTCAGGCACTTAGTCGGAAAAGCAGAAGGTTTATGATATATGTTCACTCCAAAGGCATGATAGTTGACGACGAGTATGTGATTTTGGGATCTGCCAACATCAACCAGAGATCCATGGAAGGAACTAGAGACACTGAGATTGCTATGGGAGCCTATCAACCTCATTATACGTGGGCAAGGAAACTTTCACATCCTCGTGGACAGATCTATGGATATAGGATGTCATTGTGGGCGGAGCATACGGGAACTACCGAGGAGTGTTTCAACCACCCGGAGAGCCTGGAATGTGTCAAAAGAGTTAGAACAATGGGAGAATTAAACTGGAAACAGTTTGCTGCAGATGATGTAACAGAGATGAAAGGACACCTACTGAAGTACCCCGTCGAAGTCGATAGAAGAGGAAGAGTAAGATCACTTCCTGGTCATGAAAATTTTCCAGATGTAGGAGGAAAAATAGTTGGTTCATTTCTTGGCATTCAGGAGAACCTCACTATATAA 3297 42.89 MDNYGSSPSYPYHNPYAYPRPVAPQYPPPSQYPPPSQYPPPPHYTHPNSDPYARPAYPYPYNPSHASPFAYPPPPSHSGLVEYFPHPPPHSSPLPYPYPYSDASSTGGARPSIQYHNNFQPGSSPYRYQESNTYPPPESQYPPPPSRVNSFSGHYRNDSTDSASSVSSAYPPLDDLLCNVHLSDHQPTAPASPPAPAAAPAPAPAQPSASLLANSPQSARYDRRDRFYGFPNSSFSSFDTGNSDQMVTSKQPSFSHSSSFSGSQHSQNLQIVPLHSKASLRVLLLHGNLEIWVNEAKNLPNMDMFHKTLGDMFAKLPGNMSNKIEGRVSHKITSDPYVSINVANAVIGRTFVISNNENPVWRQHFYVPVAHYAAEVVFVVKDSDVVGSQLIGTVAIPAEQIYSGSMVEGTFPILLGGKPCKPGAALSISIQYTPMERLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGMYYVHGKCWHDIFDAVRQARRLIYITGWSVWHKVKLVRDTSYGTECTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKHSSVQVILCPRIAGKRHSWVKQKEVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDTPLHPIFRTLQTVHKDDYHNPTYTGSVVGCPREPWHDLHSKIDGPAAYDVLTNFEERWRRASKPHGIKKLKSYDDALLSIERIHDIIGISEAYCTNENDPESWHVQIFRSIDSTSVKDFPKDPKDAPSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNSNKDIGANNLIPMEIALKIADKIRANERFAAYIVIPMWPEGVPTAAATQRILFWQQKTMQMMYEVVYKALMEVGLEDAFSPQDYLNFFCLGNREAMDGNDPSCSGSPNAENTPQALSRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHYTWARKLSHPRGQIYGYRMSLWAEHTGTTEECFNHPESLECVKRVRTMGELNWKQFAADDVTEMKGHLLKYPVEVDRRGRVRSLPGHENFPDVGGKIVGSFLGIQENLTI 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 197392 207058 - CcPI632755_06g000190.1 Cco06g0019 180619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0019 1098 SMART pld_4 944 971 IPR001736 GO:0003824(InterPro)
Cco06g0019 1098 SMART pld_4 611 646 IPR001736 GO:0003824(InterPro)
Cco06g0019 1098 MobiDBLite consensus disorder prediction 189 203 - -
Cco06g0019 1098 PANTHER PHOSPHOLIPASE D 284 1086 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cco06g0019 1098 MobiDBLite consensus disorder prediction 183 218 - -
Cco06g0019 1098 SMART C2_3c 288 410 IPR000008 -
Cco06g0019 1098 FunFam Phospholipase D 758 990 - -
Cco06g0019 1098 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 944 971 IPR001736 GO:0003824(InterPro)
Cco06g0019 1098 Gene3D Endonuclease Chain A 758 994 - -
Cco06g0019 1098 MobiDBLite consensus disorder prediction 105 135 - -
Cco06g0019 1098 MobiDBLite consensus disorder prediction 94 168 - -
Cco06g0019 1098 CDD C2_plant_PLD 282 433 - -
Cco06g0019 1098 Gene3D Endonuclease Chain A 489 725 - -
Cco06g0019 1098 MobiDBLite consensus disorder prediction 239 262 - -
Cco06g0019 1098 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 285 434 IPR035892 -
Cco06g0019 1098 MobiDBLite consensus disorder prediction 21 59 - -
Cco06g0019 1098 Pfam Phospholipase D C terminal 1018 1088 IPR024632 -
Cco06g0019 1098 ProSiteProfiles C2 domain profile. 265 411 IPR000008 -
Cco06g0019 1098 Gene3D C2 domain 282 425 IPR035892 -
Cco06g0019 1098 MobiDBLite consensus disorder prediction 145 168 - -
Cco06g0019 1098 FunFam Phospholipase D delta 487 724 - -
Cco06g0019 1098 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 611 646 IPR001736 GO:0003824(InterPro)
Cco06g0019 1098 Pfam C2 domain 287 412 IPR000008 -
Cco06g0019 1098 SUPERFAMILY Phospholipase D/nuclease 735 1030 - -
Cco06g0019 1098 Pfam Phospholipase D Active site motif 946 971 IPR001736 GO:0003824(InterPro)
Cco06g0019 1098 Pfam Phospholipase D Active site motif 613 646 IPR001736 GO:0003824(InterPro)
Cco06g0019 1098 SUPERFAMILY Phospholipase D/nuclease 452 711 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1834 Cco-Chr4:33162808 Cco06g0019 Cco-Chr6:197392 1.60E-262 dispersed
Cco06g0019 Cco-Chr6:197392 Cco10g0347 Cco-Chr10:4019268 0.00E+00 dispersed
Cco06g0019 Cco-Chr6:197392 Cco08g1583 Cco-Chr8:27393193 1.70E-270 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0019 K01115 - csv:101218942 1989.16