Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0023 ATGGGAAGAGGAAGAGTGGAACTGAAGAGAATAGAGAACAAAATCAACCGTCAAGTTACATTCTCAAAACGCCGAAACGGACTCCTGAAAAAGGCTTATGAACTGTCTGTTCTTTGCGATGCGGAAGTGGCTTTGATCATCTTCTCCACCCGCGGCAAGCTCTATGAATTTGGCAGTGCTGGTACCACCAAAACATTGGAGCGATATCAACGTTGTTGCTTCTCTCCTCAACACAATTATGCTGAACGACAAACCCAGAACTGGGTCCAGGAGATCTCAAAACTGAAAGCTAAATATGAATCTCTTTGCCGCACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTAAAGGAGCTCCAAAATCTTGAGAAGCAACTTGAAGCAGCCCTTGCTCAAGCTAGACAAAGGAAGGCACAGATTATGATTGAGCAGATGGAAGACCTGCGCAGAAAGGAGCGTCAACTTGGGGACCTCAACAGGGAGCTTAAGCTCAAGCTTGAAGCAGAGGGACAAAATCTTACTGCCATCCAAAGTTTTTGGAGCTCTGGGTCTGGCTCTGCTGAACATGCCAACAACTTCCCATTGCATCCTTTACCACCTAACCCTATCGAATGCCAACATGAACCCGTCTTACAAATCGGGTACCAGAATTATTTCTCAGAAGAGGGGCCATCTGTCCAAAAGAGCATGACATGTGAGACAAACTTCATACAAGGATGGGTTATTTGA 738 45.66 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFGSAGTTKTLERYQRCCFSPQHNYAERQTQNWVQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKAQIMIEQMEDLRRKERQLGDLNRELKLKLEAEGQNLTAIQSFWSSGSGSAEHANNFPLHPLPPNPIECQHEPVLQIGYQNYFSEEGPSVQKSMTCETNFIQGWVI 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 239157 244186 + CcPI632755_06g000230.1 Cco06g0023 180623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0023 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco06g0023 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0023 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0023 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0023 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0023 245 Coils Coil 119 171 - -
Cco06g0023 245 Gene3D - 13 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0023 245 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco06g0023 245 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0023 245 Pfam K-box region 82 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco06g0023 245 FunFam MADS-box transcription factor 1 13 85 - -
Cco06g0023 245 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0023 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0023 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0023 245 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0383 Cco-Chr3:4134163 Cco06g0023 Cco-Chr6:239157 1.30E-29 dispersed
Cco06g0023 Cco-Chr6:239157 Cco06g0210 Cco-Chr6:2234046 4.70E-56 dispersed
Cco06g0023 Cco-Chr6:239157 Cco06g0024 Cco-Chr6:245863 2.70E-35 tandem
Cco05g2100 Cco-Chr5:29975605 Cco06g0023 Cco-Chr6:239157 2.50E-25 transposed
Cco01g0335 Cco-Chr1:3291700 Cco06g0023 Cco-Chr6:239157 6.40E-33 wgd
Cco05g0921 Cco-Chr5:7986307 Cco06g0023 Cco-Chr6:239157 5.10E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59426 PF01486 K-box 6.30E-29 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0023 K09264 - csv:101219421 411.379