Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0024 ATGGTGAGAGGAAAGACGCAGATGAGGTTGATAGAGAACGCCACAAGCCGACAAGTCACCTTCTCCAAGAGGCGAAATGGTTTGATGAAAAAAGCTTTTGAGCTATCAGTTCTCTGTGATGCTGAAGTTGCTCTTATTATTTTCTCCCCTAGAGGAAAGCTTTACGAATTTGCTAGCTCAAGCATGCAGGCAACTATAGAGCGTTACGGAAAGCATGCAAAAACCAAGGATGCCCAGGATCCTCCATCTGTTAATAATGTTGTACAGTTGGAGCATCTGAATCATGAAGAAGCAGCTAGCCTGATGAAGAAAATAGAGCAACTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCATGGATGAACTTCAACAACTTGAAAATCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGATTGAAGTGTTTGAAGAACAGATTAAACAACTAAGGCAAAAGGAGAAAGTCTTGCAAGACGAAAATGCTAAGCTACTTCAAAAGTGGGAAAGTGAGGGAGATGGAGGAGTAAATAATGAAGGAGAAAGAGGAGAGAAATTGTTAAACTATGCAGAAAGTAGCAGCCCAAGTTCTGAGGTGGAGACGGAATTGTTCATTGGGCCACCCGAAGCAAGGCCCAGAAGATTTCTTTCTCTTCACTGA 681 41.85 MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQATIERYGKHAKTKDAQDPPSVNNVVQLEHLNHEEAASLMKKIEQLEVSKRKMLGEDLGSCSMDELQQLENQLEKSVCKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGDGGVNNEGERGEKLLNYAESSSPSSEVETELFIGPPEARPRRFLSLH 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 245863 257021 - CcPI632755_06g000240.1 Cco06g0024 180624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0024 226 Coils Coil 98 118 - -
Cco06g0024 226 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0024 226 Coils Coil 128 174 - -
Cco06g0024 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0024 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0024 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0024 226 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco06g0024 226 Pfam K-box region 94 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco06g0024 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco06g0024 226 Gene3D - 14 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0024 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0024 226 FunFam MADS-box transcription factor 1 13 83 - -
Cco06g0024 226 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0024 226 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco06g0024 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0024 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0335 Cco-Chr1:3291700 Cco06g0024 Cco-Chr6:245863 3.30E-53 dispersed
Cco01g0562 Cco-Chr1:5524583 Cco06g0024 Cco-Chr6:245863 5.50E-45 dispersed
Cco05g0237 Cco-Chr5:1844298 Cco06g0024 Cco-Chr6:245863 2.40E-55 dispersed
Cco05g0928 Cco-Chr5:8103875 Cco06g0024 Cco-Chr6:245863 2.50E-44 dispersed
Cco06g0024 Cco-Chr6:245863 Cco08g0096 Cco-Chr8:1584628 2.10E-34 dispersed
Cco06g0023 Cco-Chr6:239157 Cco06g0024 Cco-Chr6:245863 2.70E-35 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59427 PF01486 K-box 2.60E-25 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0024 - - - 0.0