Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0033 ATGGATGGAATTACACCCCACAATCGCCCTCTTCCTCCTCCTTTCCTTTCCAAAGATCTCCATCTCCACCATGGATTATTCCACCACCACCAAAACTCCGACGACGACCAAACCGCCGGAGCTAAGAGGGATAGAGAGGACGAAAACCCCACCACGGCGGCGATGGCGGACAGCAAAGAATTATCTAATTCTTCATCTCGACGCCCACGTGGCCGACCAGCTGGTTCCAAAAACAAGCCAAAGCCACCCGTTATAATTACTAGAGACAGCGCTAACGCCCTCAGATCTCATCTCATCGAAATCTCCACTGCCTCCGACATCGTCGATTCCCTCGCTGCCTTCGCACGCCGCCGCCAGCGTGGCGTTTGTATTCTAAGTGCCACGGGTACCGTCGCCAACGTCACTCTCCGGCAGCCGGCCTCCCCCGGCGCTGTCATCACCTTACATGGGAGATTTGAAATTCTCTCCCTCTCCGGCTCTTTCCTCCCACCGCCGGCTCCCCCGGCCGCCTCTGGTCTGACCGTCTACTTGGCTGGCGGGCAGGGGCAGGTCGTCGGTGGGAATGTAATCGGCCCACTTTCGGCGTCCGGTCCGGTGATTATCATGGCGGCTTCTTTTGGTAATGCTGCGTATGAACGGCTACCCATTGATGACGACGACGAAACGTCACCGGCAGCAGAGATTGCCGGACAACAGGCAGCACCGCCGCCGCCACAATTGATGGGGGATCCTAATGGGGGATTGTTTCATGGGATGGCGCAGAATGTTGTGAATTCTTCATGCCAATTGCCGGCAGAGGCGGCGGCGGCGTTTTGGGGAGGAGGTCGGCCACCGTATTGA 840 57.62 MDGITPHNRPLPPPFLSKDLHLHHGLFHHHQNSDDDQTAGAKRDREDENPTTAAMADSKELSNSSSRRPRGRPAGSKNKPKPPVIITRDSANALRSHLIEISTASDIVDSLAAFARRRQRGVCILSATGTVANVTLRQPASPGAVITLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPLSASGPVIIMAASFGNAAYERLPIDDDDETSPAAEIAGQQAAPPPPQLMGDPNGGLFHGMAQNVVNSSCQLPAEAAAAFWGGGRPPY 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 328259 329098 - CcPI632755_06g000330.1 Cco06g0033 180633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0033 279 MobiDBLite consensus disorder prediction 55 71 - -
Cco06g0033 279 FunFam AT-hook motif nuclear-localized protein 94 221 - -
Cco06g0033 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 240 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cco06g0033 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 206 IPR005175 -
Cco06g0033 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 218 - -
Cco06g0033 279 CDD DUF296 95 206 IPR005175 -
Cco06g0033 279 ProSiteProfiles PPC domain profile profile. 91 231 IPR005175 -
Cco06g0033 279 Gene3D - 94 224 - -
Cco06g0033 279 MobiDBLite consensus disorder prediction 216 244 - -
Cco06g0033 279 MobiDBLite consensus disorder prediction 28 85 - -
Cco06g0033 279 MobiDBLite consensus disorder prediction 28 53 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0337 Cco-Chr2:3060265 Cco06g0033 Cco-Chr6:328259 6.40E-59 dispersed
Cco06g0033 Cco-Chr6:328259 Cco09g1233 Cco-Chr9:12556308 2.70E-60 dispersed
Cco01g0360 Cco-Chr1:3573258 Cco06g0033 Cco-Chr6:328259 1.20E-74 wgd
Cco05g0258 Cco-Chr5:2040441 Cco06g0033 Cco-Chr6:328259 3.80E-67 wgd
Cco05g0898 Cco-Chr5:7771166 Cco06g0033 Cco-Chr6:328259 2.90E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0033 - - - 0.0