Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0035 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGGCCGGGAACTGCCAGCGCCGGCGGTGGCGTCGGTGGCGGCGGAGGAGGGCCATGTGGAGCTTGCAAGTTTTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTTGCCCCTTATTTCGACTCCGAGCAAGGCGCAGCCCATTTCGCAGCTGTGCACAAGGTGTTCGGAGCCAGCAACGTCTCAAAGCTCCTCCTTCATATTCCGGTCCACAAACGTCTCGACGCTGTCGTCACAATTTGTTACGAGGCTCAAGCACGTCTCCGAGACCCTGTCTACGGTTGCGTCGCTCACATCTTCGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGACTTACCTTCAAGCCCATCTAGCAACACTGGAGCTTCCGTCCCCGCCGAACCCGCCGCCGCCACCTCCGCCACCAAGTTTTCCGGCGCAACCGCCGCTTTCCATCTCAGACCTGCCGTCGGCCTCCTCCCTGCCGGCCACTTACGACTTGTCGTCCCTCTTCGATCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCCCCGCCAGTTCGCCGGCGGAGGTGGCGGTTCATCAACGGCGGCAGGAGAAGGCGATCTTCAAGCCCTGGCTCGCGAACTCCTCCATAGACACGGCGCTCTGCCGTGCTCCGACGCCTCGTCGCCGCAATCGCTCTCTAAATGA 723 60.86 MSANPSTSGGGGPGTASAGGGVGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELTYLQAHLATLELPSPPNPPPPPPPPSFPAQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDPRQFAGGGGGSSTAAGEGDLQALARELLHRHGALPCSDASSPQSLSK 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 348355 351308 - CcPI632755_06g000350.1 Cco06g0035 180635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0035 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 26 147 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cco06g0035 240 MobiDBLite consensus disorder prediction 135 155 - -
Cco06g0035 240 Pfam Lateral organ boundaries (LOB) domain 29 127 IPR004883 -
Cco06g0035 240 MobiDBLite consensus disorder prediction 185 219 - -
Cco06g0035 240 MobiDBLite consensus disorder prediction 134 158 - -
Cco06g0035 240 ProSiteProfiles LOB domain profile. 28 130 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0035 Cco-Chr6:348355 Cco07g0094 Cco-Chr7:951063 7.60E-43 dispersed
Cco06g0035 Cco-Chr6:348355 Cco06g0036 Cco-Chr6:366267 1.80E-39 tandem
Cco07g0347 Cco-Chr7:3663341 Cco06g0035 Cco-Chr6:348355 8.20E-36 transposed
Cco09g0780 Cco-Chr9:7184727 Cco06g0035 Cco-Chr6:348355 5.10E-39 transposed
Cco10g1573 Cco-Chr10:28943397 Cco06g0035 Cco-Chr6:348355 1.60E-37 transposed
Cco05g0262 Cco-Chr5:2078869 Cco06g0035 Cco-Chr6:348355 6.60E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59428 PF03195 LOB 2.70E-38 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0035 K21994 - csv:101220603 378.637