Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0035 | ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGGCCGGGAACTGCCAGCGCCGGCGGTGGCGTCGGTGGCGGCGGAGGAGGGCCATGTGGAGCTTGCAAGTTTTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTTGCCCCTTATTTCGACTCCGAGCAAGGCGCAGCCCATTTCGCAGCTGTGCACAAGGTGTTCGGAGCCAGCAACGTCTCAAAGCTCCTCCTTCATATTCCGGTCCACAAACGTCTCGACGCTGTCGTCACAATTTGTTACGAGGCTCAAGCACGTCTCCGAGACCCTGTCTACGGTTGCGTCGCTCACATCTTCGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGACTTACCTTCAAGCCCATCTAGCAACACTGGAGCTTCCGTCCCCGCCGAACCCGCCGCCGCCACCTCCGCCACCAAGTTTTCCGGCGCAACCGCCGCTTTCCATCTCAGACCTGCCGTCGGCCTCCTCCCTGCCGGCCACTTACGACTTGTCGTCCCTCTTCGATCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCCCCGCCAGTTCGCCGGCGGAGGTGGCGGTTCATCAACGGCGGCAGGAGAAGGCGATCTTCAAGCCCTGGCTCGCGAACTCCTCCATAGACACGGCGCTCTGCCGTGCTCCGACGCCTCGTCGCCGCAATCGCTCTCTAAATGA | 723 | 60.86 | MSANPSTSGGGGPGTASAGGGVGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELTYLQAHLATLELPSPPNPPPPPPPPSFPAQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDPRQFAGGGGGSSTAAGEGDLQALARELLHRHGALPCSDASSPQSLSK | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 348355 | 351308 | - | CcPI632755_06g000350.1 | Cco06g0035 | 180635 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0035 | 240 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 26 | 147 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
Cco06g0035 | 240 | MobiDBLite | consensus disorder prediction | 135 | 155 | - | - | |
Cco06g0035 | 240 | Pfam | Lateral organ boundaries (LOB) domain | 29 | 127 | IPR004883 | - | |
Cco06g0035 | 240 | MobiDBLite | consensus disorder prediction | 185 | 219 | - | - | |
Cco06g0035 | 240 | MobiDBLite | consensus disorder prediction | 134 | 158 | - | - | |
Cco06g0035 | 240 | ProSiteProfiles | LOB domain profile. | 28 | 130 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0035 | Cco-Chr6:348355 | Cco07g0094 | Cco-Chr7:951063 | 7.60E-43 | dispersed | |
Cco06g0035 | Cco-Chr6:348355 | Cco06g0036 | Cco-Chr6:366267 | 1.80E-39 | tandem | |
Cco07g0347 | Cco-Chr7:3663341 | Cco06g0035 | Cco-Chr6:348355 | 8.20E-36 | transposed | |
Cco09g0780 | Cco-Chr9:7184727 | Cco06g0035 | Cco-Chr6:348355 | 5.10E-39 | transposed | |
Cco10g1573 | Cco-Chr10:28943397 | Cco06g0035 | Cco-Chr6:348355 | 1.60E-37 | transposed | |
Cco05g0262 | Cco-Chr5:2078869 | Cco06g0035 | Cco-Chr6:348355 | 6.60E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59428 | PF03195 | LOB | 2.70E-38 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0035 | K21994 | - | csv:101220603 | 378.637 |