Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0036 | ATGACCCACACCCACACACCAATTGGCCTACATCAAGAGGCCCTGATGAGTGGCGGCGGCGGCGGCGGCCAAGGGGGAGGGCCTTGCGGCGCGTGCAAGTTTTTGAGGAGAAAGTGTGTGAAAGGGTGCATTTTTGCACCCTATTTTGACTCCGAGCAAGGCGCCGCCCACTTTGCCGCCGTGCATAAGGTGTTCGGAGCTAGCAATGCCTCTAAGCTCCTCCACCGCATCCCGCCTCCCAAGCGTCTCGACGCTTGCGTTACTCTTTGTTACGAGGCTCTTGCTAGGGTTCGAGACCCTGTCTATGGTTGTGTTGCTCAAATTTTCACCCTCCAACAACAGGTAGTGAATTTGCAGGCAGAGCTAGCATACATTCAGGCCAAACTTGCCACCTTGCAGCGGCTGTTTCCGCCACCGTTACAGGACGCATCACTGCCCACTCGCGACGCTCTGCTCCCGGAAACAATACCGGGCTCCGAAATGGGCTTGATGTCCAACGTTCCAATGCTGCTTGATCCCCTCCAAACGCAACTAGGTTATAACGAAATGACAAATAATTTTCCGAACCCAATTTATCATCAAGATCAGATGGATGAAGACGGTGATCTTCAGTCTTTGGCTCGAGAATTGGTTTCGAGGTACTTGCCCGAAGTACGACACCGGCCGCCGTGCTCACATATTTAA | 684 | 53.51 | MTHTHTPIGLHQEALMSGGGGGGQGGGPCGACKFLRRKCVKGCIFAPYFDSEQGAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVAQIFTLQQQVVNLQAELAYIQAKLATLQRLFPPPLQDASLPTRDALLPETIPGSEMGLMSNVPMLLDPLQTQLGYNEMTNNFPNPIYHQDQMDEDGDLQSLARELVSRYLPEVRHRPPCSHI | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 366267 | 369660 | + | CcPI632755_06g000360.1 | Cco06g0036 | 180636 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0036 | 227 | Pfam | Lateral organ boundaries (LOB) domain | 28 | 126 | IPR004883 | - | |
Cco06g0036 | 227 | ProSiteProfiles | LOB domain profile. | 27 | 129 | IPR004883 | - | |
Cco06g0036 | 227 | Coils | Coil | 115 | 135 | - | - | |
Cco06g0036 | 227 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 24 | 143 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0036 | Cco-Chr6:366267 | Cco07g0095 | Cco-Chr7:960824 | 1.00E-33 | dispersed | |
Cco06g0035 | Cco-Chr6:348355 | Cco06g0036 | Cco-Chr6:366267 | 1.80E-39 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59429 | PF03195 | LOB | 2.80E-36 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0036 | - | - | - | 0.0 |