Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0036 ATGACCCACACCCACACACCAATTGGCCTACATCAAGAGGCCCTGATGAGTGGCGGCGGCGGCGGCGGCCAAGGGGGAGGGCCTTGCGGCGCGTGCAAGTTTTTGAGGAGAAAGTGTGTGAAAGGGTGCATTTTTGCACCCTATTTTGACTCCGAGCAAGGCGCCGCCCACTTTGCCGCCGTGCATAAGGTGTTCGGAGCTAGCAATGCCTCTAAGCTCCTCCACCGCATCCCGCCTCCCAAGCGTCTCGACGCTTGCGTTACTCTTTGTTACGAGGCTCTTGCTAGGGTTCGAGACCCTGTCTATGGTTGTGTTGCTCAAATTTTCACCCTCCAACAACAGGTAGTGAATTTGCAGGCAGAGCTAGCATACATTCAGGCCAAACTTGCCACCTTGCAGCGGCTGTTTCCGCCACCGTTACAGGACGCATCACTGCCCACTCGCGACGCTCTGCTCCCGGAAACAATACCGGGCTCCGAAATGGGCTTGATGTCCAACGTTCCAATGCTGCTTGATCCCCTCCAAACGCAACTAGGTTATAACGAAATGACAAATAATTTTCCGAACCCAATTTATCATCAAGATCAGATGGATGAAGACGGTGATCTTCAGTCTTTGGCTCGAGAATTGGTTTCGAGGTACTTGCCCGAAGTACGACACCGGCCGCCGTGCTCACATATTTAA 684 53.51 MTHTHTPIGLHQEALMSGGGGGGQGGGPCGACKFLRRKCVKGCIFAPYFDSEQGAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVAQIFTLQQQVVNLQAELAYIQAKLATLQRLFPPPLQDASLPTRDALLPETIPGSEMGLMSNVPMLLDPLQTQLGYNEMTNNFPNPIYHQDQMDEDGDLQSLARELVSRYLPEVRHRPPCSHI 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 366267 369660 + CcPI632755_06g000360.1 Cco06g0036 180636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0036 227 Pfam Lateral organ boundaries (LOB) domain 28 126 IPR004883 -
Cco06g0036 227 ProSiteProfiles LOB domain profile. 27 129 IPR004883 -
Cco06g0036 227 Coils Coil 115 135 - -
Cco06g0036 227 PANTHER LOB DOMAIN CONTAINING PROTEIN 24 143 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0036 Cco-Chr6:366267 Cco07g0095 Cco-Chr7:960824 1.00E-33 dispersed
Cco06g0035 Cco-Chr6:348355 Cco06g0036 Cco-Chr6:366267 1.80E-39 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59429 PF03195 LOB 2.80E-36 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0036 - - - 0.0