Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0047 | ATGTCCTCAATTGGTTCTTATTTACGGAGCCGTGCGATAAGTGCAGAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGTTCGTCGTTCTTAAGCGGCATACGCCTATTTTTGAAGGGATCTTTTCTCTTATTGAGAGATTTCTCAACAATGCCCCTAAGCGTGACTGTGAAGACAAGCAGATCTGGGCGATGAGGAGGGACGAAAGGCAGGAGGTCGTTGCGCGCTCCCGTATCGGCCCCAACATCCATCGCTTCGCCCAGTTGCCCTCTCCCTTCACTCCCAACCAGCATTCACCTCTTTCTTCCTCAGATCTACACTCTCCGTCGCCTTCACTCTCAGGTCCCAATTTGCTGGAGTCTTTCGCGAGCAGTCAAATGGATGGACCAACTGGTCGCAGTGGCGGTGGCATGGATATGAATTTACCGAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCAGAGCATGCTTTAACTGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGTAAGATAAAAAATTTGGACATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGACTGTTCATGCATCCGCACATTATACGGCTCTATGAGGTTATAGAGACCCCAGCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGGGAGCTCTTTGACTATATTGTAGAAAAGGGAAGGTTGCAGGAGGATGAAGCCCGTAATTTTTTCCAACAGATTATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGATCTCAAGCCGGAGAACTTGCTTCTTGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCTCCAGAGGTCATCTCTGGGAAATTATACGCTGGACCTGAAGTAGATGTGTGGAGTTGTGGTGTGATTTTGTATGCTCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATTCCTAGCATGCTGGTGGTTGACCCAATGAAACGCATCACGATCCCTGAGATTCGGCAGCACCCATGGTTTCAGGCTCATCTTCCACGCTATTTAGCCGTGCCTCCACCTGATACAATGCAACAGGCAAAAAAGATTGATGAAGACATTCTTCAGGAAGTTGTAAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTCGTAACCGTATTCAAAATGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTCCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGATTCAACCATATGCACCCTGGTGATCCTACAAGTCCTGCTGTAGGACACCGTCTTCCTGGGTATATGGATTACCAAGGAATGGGCTTAAGATCACAGTTTCCCGTTGAGAGGAAGTGGGCCCTGGGATTACAGTCTCGAGCTCATCCTCGTGAAATTATGACCGAAGTTCTTAAAGCCCTACGAGAGCTCAATGTGGCTTGGAAGAAGATTGGGCACTATAATATGAAATGTAGATGGTTGCCTGGAATTCCAGGCCATCATGAAGGCATGATTAACAACCCTGTGCATAGTAATCATTACTTTGGGGACGAGTCTACCATCATTGAAAATGACGGCGTTGTAAAATTGCCGAATGTTATTAAGTTTGAAGTACAGCTGTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCTTTCCTTGCCCAGCTCCGAAATCTTAGTTCCTCTTCCCCTTCCCTCTTTAGATGGATAGTTCAATCTTGTGTAAATCTGATTTTCGGTAGTAGAAGTTGTCGATCTCGGTGTCCAATATTGATTGGTGATGCCCTTGATCCTTGGCTGTCGTTTTCTTGTCGTCAAGATTCCCGAAATCCTTTCCTCTTTGAACTCGCAAAGATGACTCAAGACGCCGAGATGAAAGAGCTTCCTGCTCCATTGTCGTCTTCTTCCTCTTCAGCTTCCCCCTTAACTCTGCAACATTTGAAAGAGATTGTGTCGCTCATTGAGACCGGTGCCTATGCTCGGGAGGTTCGGCGGATTGTTCGTGCCATTCGTCTGACTATGGCGTTGAGGCGGAAGTTGAAGGCTTCTGTCGTTTCTCAATTTCTGAATCTTGTTCTCCCCCCAGGGTCCGAGGTGCACACTAGGTTATCGTCATTTCTTCCAAAGGAGGATGACTGTGAAATGGATGTTGACACGGCAACACAAGCTCCTGCCAAACACCCTTTGCCCGAGATAGAGATATTTTGCTACTTGATTGTGCTAATATTTTTGATTGATCAGAAGAAATATGCTGATGCTAAAGCTTGCGCCTCCGCAAGCATTGCTCGGGTTAAGAACCTTAATAGGAGAACAGTCGATGTTTTAGCATCCAGGCTCTACTTCTATTACTCCCTCAGCTATGAACTCACTGGTGATCTTGCTGAAATAAGGGGCAACCTCCTAGCCCTGCATCGCATTGCAACCTTGCGCCATGATGAATTGGGTCAGGAAACCCTCCTTAACCTTCTACTTCGTAATTACCTCCACTACAACCTTTATGATCAAGCTGAGAAGTTGAGGTCCAAGGCACCCCGGTTTGAAGCTCACTCAAATCAGCAGTTCTGTAGGTACCTATTTTACCTTGGCAAGATCAGGACCATTCAGCTGGAGTACACAGATGCAAAGGAGTCTCTTCTACAAGCTGCTCGGAAAGCACCCATTGCAGCTCTTGGTTTTCGAGTGCAATGCAACAAATGGGCAATCATTGTTCGCTTGCTGCTAGGAGAAATCCCTGAGAGGACCGTTTTCATGCAGAAAGGCATGGAGACAGCTCTGAGGCCATACTTTGAACTTACAAATGCTGTGAGAATTGGTGACTTGGAGCTTTTCAGGACAGTTGCCGAGAAGTTCTCTAGCACTTTCAGCTCAGATCGAACTAACAACTTGATCGTGAGGCTGCGACACAATGTCATTAGGACTGGGCTTCGCAACATTAGCATTTCTTATTCACGAATTTCTCTGGTTGATGTTGCTAAAAAGCTTAGGTTGGACTCAGCAAATCCTGTTGCTGATGCTGAGAGTATCGTCTCCAAGGCAATCCGAGATGGAGCAATTGATGCAACAGTCGATCATGGGAATGGATGGATGGTATCAAAGGAGACTGGTGATATTTACTCTACCAATGAACCTCAGCTTGCTTTCAACTCGAGGATTGCGTTTTGCCTGAATATGCATAATGACGCAGTTCGTGCCCTTCGGTTTCCACCAAATTCACACAAGGAAAAAGAAAGCGCCGAGAAAAGAAGAGAAAGACAACAGCAGGAGCAAGAACTTGCAAAACACATAGCCGAAGAAGATGACGACGACTTTTAG | 3564 | 45.31 | MSSIGSYLRSRAISAERTILSPFTKEYRVFVVLKRHTPIFEGIFSLIERFLNNAPKRDCEDKQIWAMRRDERQEVVARSRIGPNIHRFAQLPSPFTPNQHSPLSSSDLHSPSPSLSGPNLLESFASSQMDGPTGRSGGGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNHMHPGDPTSPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINNPVHSNHYFGDESTIIENDGVVKLPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRNLSSSSPSLFRWIVQSCVNLIFGSRSCRSRCPILIGDALDPWLSFSCRQDSRNPFLFELAKMTQDAEMKELPAPLSSSSSSASPLTLQHLKEIVSLIETGAYAREVRRIVRAIRLTMALRRKLKASVVSQFLNLVLPPGSEVHTRLSSFLPKEDDCEMDVDTATQAPAKHPLPEIEIFCYLIVLIFLIDQKKYADAKACASASIARVKNLNRRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMETALRPYFELTNAVRIGDLELFRTVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHGNGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNDAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF | 1187 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 423643 | 439601 | - | CcPI632755_06g000470.1 | Cco06g0047 | 180647 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0047 | 1187 | FunFam | Non-specific serine/threonine protein kinase | 138 | 477 | - | - | |
Cco06g0047 | 1187 | Gene3D | Kinase associated domain 1, KA1 | 523 | 642 | - | - | |
Cco06g0047 | 1187 | SUPERFAMILY | Protein kinase-like (PK-like) | 144 | 417 | IPR011009 | - | |
Cco06g0047 | 1187 | SUPERFAMILY | KA1-like | 456 | 642 | IPR028375 | - | |
Cco06g0047 | 1187 | CDD | UBA_SnRK1_plant | 421 | 461 | - | - | |
Cco06g0047 | 1187 | Pfam | Protein kinase domain | 147 | 399 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0047 | 1187 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 420 | 460 | IPR015940 | - | |
Cco06g0047 | 1187 | MobiDBLite | consensus disorder prediction | 90 | 140 | - | - | |
Cco06g0047 | 1187 | FunFam | 26S proteasome non-ATPase regulatory subunit 3 | 820 | 1143 | - | - | |
Cco06g0047 | 1187 | FunFam | Non-specific serine/threonine protein kinase | 137 | 226 | - | - | |
Cco06g0047 | 1187 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 1045 | 1138 | IPR000717 | - | |
Cco06g0047 | 1187 | SMART | PCI/PINT associated module | 874 | 1045 | - | - | |
Cco06g0047 | 1187 | Pfam | Proteasome regulatory subunit C-terminal | 1120 | 1186 | IPR013586 | GO:0000502(InterPro)|GO:0030234(InterPro)|GO:0042176(InterPro) | |
Cco06g0047 | 1187 | Coils | Coil | 1154 | 1181 | - | - | |
Cco06g0047 | 1187 | Pfam | Kinase associated domain 1 | 600 | 641 | IPR001772 | - | |
Cco06g0047 | 1187 | SUPERFAMILY | Winged helix DNA-binding domain | 1047 | 1121 | IPR036390 | - | |
Cco06g0047 | 1187 | MobiDBLite | consensus disorder prediction | 1151 | 1180 | - | - | |
Cco06g0047 | 1187 | ProSiteProfiles | Protein kinase domain profile. | 147 | 399 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0047 | 1187 | CDD | STKc_AMPK_alpha | 144 | 399 | - | - | |
Cco06g0047 | 1187 | PANTHER | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 | 703 | 1183 | IPR050756 | GO:0006511(PANTHER)|GO:0008541(PANTHER) | |
Cco06g0047 | 1187 | Pfam | UBA/TS-N domain | 421 | 457 | IPR015940 | - | |
Cco06g0047 | 1187 | ProSiteProfiles | PCI domain profile. | 939 | 1120 | IPR000717 | - | |
Cco06g0047 | 1187 | ProSitePatterns | Protein kinases ATP-binding region signature. | 153 | 176 | IPR017441 | GO:0005524(InterPro) | |
Cco06g0047 | 1187 | Gene3D | - | 954 | 1136 | - | - | |
Cco06g0047 | 1187 | CDD | AMPKA_C | 517 | 640 | - | - | |
Cco06g0047 | 1187 | MobiDBLite | consensus disorder prediction | 1151 | 1187 | - | - | |
Cco06g0047 | 1187 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 266 | 278 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g0047 | 1187 | ProSiteProfiles | Kinase associated domain 1 (KA1) profile. | 594 | 642 | IPR001772 | - | |
Cco06g0047 | 1187 | MobiDBLite | consensus disorder prediction | 91 | 133 | - | - | |
Cco06g0047 | 1187 | SMART | uba_6 | 422 | 459 | IPR015940 | - | |
Cco06g0047 | 1187 | Gene3D | Transferase(Phosphotransferase) domain 1 | 140 | 478 | - | - | |
Cco06g0047 | 1187 | FunFam | Non-specific serine/threonine protein kinase | 523 | 641 | - | - | |
Cco06g0047 | 1187 | Pfam | PCI domain | 1035 | 1116 | IPR000717 | - | |
Cco06g0047 | 1187 | SMART | serkin_6 | 147 | 399 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0441 | Cco-Chr2:3984225 | Cco06g0047 | Cco-Chr6:423643 | 9.10E-253 | dispersed | |
Cco02g1467 | Cco-Chr2:27189146 | Cco06g0047 | Cco-Chr6:423643 | 1.30E-09 | dispersed | |
Cco02g2259 | Cco-Chr2:35144687 | Cco06g0047 | Cco-Chr6:423643 | 6.80E-39 | dispersed | |
Cco06g0047 | Cco-Chr6:423643 | Cco11g0072 | Cco-Chr11:746081 | 3.50E-197 | dispersed | |
Cco06g0047 | Cco-Chr6:423643 | Cco02g2566 | Cco-Chr2:37969250 | 5.40E-73 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86892 | PF00069 | Pkinase | 1.40E-79 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0047 | K07198 | - | csv:101211720 | 1007.28 |