Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0047 ATGTCCTCAATTGGTTCTTATTTACGGAGCCGTGCGATAAGTGCAGAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGTTCGTCGTTCTTAAGCGGCATACGCCTATTTTTGAAGGGATCTTTTCTCTTATTGAGAGATTTCTCAACAATGCCCCTAAGCGTGACTGTGAAGACAAGCAGATCTGGGCGATGAGGAGGGACGAAAGGCAGGAGGTCGTTGCGCGCTCCCGTATCGGCCCCAACATCCATCGCTTCGCCCAGTTGCCCTCTCCCTTCACTCCCAACCAGCATTCACCTCTTTCTTCCTCAGATCTACACTCTCCGTCGCCTTCACTCTCAGGTCCCAATTTGCTGGAGTCTTTCGCGAGCAGTCAAATGGATGGACCAACTGGTCGCAGTGGCGGTGGCATGGATATGAATTTACCGAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCAGAGCATGCTTTAACTGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGTAAGATAAAAAATTTGGACATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGACTGTTCATGCATCCGCACATTATACGGCTCTATGAGGTTATAGAGACCCCAGCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGGGAGCTCTTTGACTATATTGTAGAAAAGGGAAGGTTGCAGGAGGATGAAGCCCGTAATTTTTTCCAACAGATTATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGATCTCAAGCCGGAGAACTTGCTTCTTGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCTCCAGAGGTCATCTCTGGGAAATTATACGCTGGACCTGAAGTAGATGTGTGGAGTTGTGGTGTGATTTTGTATGCTCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATTCCTAGCATGCTGGTGGTTGACCCAATGAAACGCATCACGATCCCTGAGATTCGGCAGCACCCATGGTTTCAGGCTCATCTTCCACGCTATTTAGCCGTGCCTCCACCTGATACAATGCAACAGGCAAAAAAGATTGATGAAGACATTCTTCAGGAAGTTGTAAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTCGTAACCGTATTCAAAATGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTCCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGATTCAACCATATGCACCCTGGTGATCCTACAAGTCCTGCTGTAGGACACCGTCTTCCTGGGTATATGGATTACCAAGGAATGGGCTTAAGATCACAGTTTCCCGTTGAGAGGAAGTGGGCCCTGGGATTACAGTCTCGAGCTCATCCTCGTGAAATTATGACCGAAGTTCTTAAAGCCCTACGAGAGCTCAATGTGGCTTGGAAGAAGATTGGGCACTATAATATGAAATGTAGATGGTTGCCTGGAATTCCAGGCCATCATGAAGGCATGATTAACAACCCTGTGCATAGTAATCATTACTTTGGGGACGAGTCTACCATCATTGAAAATGACGGCGTTGTAAAATTGCCGAATGTTATTAAGTTTGAAGTACAGCTGTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCTTTCCTTGCCCAGCTCCGAAATCTTAGTTCCTCTTCCCCTTCCCTCTTTAGATGGATAGTTCAATCTTGTGTAAATCTGATTTTCGGTAGTAGAAGTTGTCGATCTCGGTGTCCAATATTGATTGGTGATGCCCTTGATCCTTGGCTGTCGTTTTCTTGTCGTCAAGATTCCCGAAATCCTTTCCTCTTTGAACTCGCAAAGATGACTCAAGACGCCGAGATGAAAGAGCTTCCTGCTCCATTGTCGTCTTCTTCCTCTTCAGCTTCCCCCTTAACTCTGCAACATTTGAAAGAGATTGTGTCGCTCATTGAGACCGGTGCCTATGCTCGGGAGGTTCGGCGGATTGTTCGTGCCATTCGTCTGACTATGGCGTTGAGGCGGAAGTTGAAGGCTTCTGTCGTTTCTCAATTTCTGAATCTTGTTCTCCCCCCAGGGTCCGAGGTGCACACTAGGTTATCGTCATTTCTTCCAAAGGAGGATGACTGTGAAATGGATGTTGACACGGCAACACAAGCTCCTGCCAAACACCCTTTGCCCGAGATAGAGATATTTTGCTACTTGATTGTGCTAATATTTTTGATTGATCAGAAGAAATATGCTGATGCTAAAGCTTGCGCCTCCGCAAGCATTGCTCGGGTTAAGAACCTTAATAGGAGAACAGTCGATGTTTTAGCATCCAGGCTCTACTTCTATTACTCCCTCAGCTATGAACTCACTGGTGATCTTGCTGAAATAAGGGGCAACCTCCTAGCCCTGCATCGCATTGCAACCTTGCGCCATGATGAATTGGGTCAGGAAACCCTCCTTAACCTTCTACTTCGTAATTACCTCCACTACAACCTTTATGATCAAGCTGAGAAGTTGAGGTCCAAGGCACCCCGGTTTGAAGCTCACTCAAATCAGCAGTTCTGTAGGTACCTATTTTACCTTGGCAAGATCAGGACCATTCAGCTGGAGTACACAGATGCAAAGGAGTCTCTTCTACAAGCTGCTCGGAAAGCACCCATTGCAGCTCTTGGTTTTCGAGTGCAATGCAACAAATGGGCAATCATTGTTCGCTTGCTGCTAGGAGAAATCCCTGAGAGGACCGTTTTCATGCAGAAAGGCATGGAGACAGCTCTGAGGCCATACTTTGAACTTACAAATGCTGTGAGAATTGGTGACTTGGAGCTTTTCAGGACAGTTGCCGAGAAGTTCTCTAGCACTTTCAGCTCAGATCGAACTAACAACTTGATCGTGAGGCTGCGACACAATGTCATTAGGACTGGGCTTCGCAACATTAGCATTTCTTATTCACGAATTTCTCTGGTTGATGTTGCTAAAAAGCTTAGGTTGGACTCAGCAAATCCTGTTGCTGATGCTGAGAGTATCGTCTCCAAGGCAATCCGAGATGGAGCAATTGATGCAACAGTCGATCATGGGAATGGATGGATGGTATCAAAGGAGACTGGTGATATTTACTCTACCAATGAACCTCAGCTTGCTTTCAACTCGAGGATTGCGTTTTGCCTGAATATGCATAATGACGCAGTTCGTGCCCTTCGGTTTCCACCAAATTCACACAAGGAAAAAGAAAGCGCCGAGAAAAGAAGAGAAAGACAACAGCAGGAGCAAGAACTTGCAAAACACATAGCCGAAGAAGATGACGACGACTTTTAG 3564 45.31 MSSIGSYLRSRAISAERTILSPFTKEYRVFVVLKRHTPIFEGIFSLIERFLNNAPKRDCEDKQIWAMRRDERQEVVARSRIGPNIHRFAQLPSPFTPNQHSPLSSSDLHSPSPSLSGPNLLESFASSQMDGPTGRSGGGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNHMHPGDPTSPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINNPVHSNHYFGDESTIIENDGVVKLPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRNLSSSSPSLFRWIVQSCVNLIFGSRSCRSRCPILIGDALDPWLSFSCRQDSRNPFLFELAKMTQDAEMKELPAPLSSSSSSASPLTLQHLKEIVSLIETGAYAREVRRIVRAIRLTMALRRKLKASVVSQFLNLVLPPGSEVHTRLSSFLPKEDDCEMDVDTATQAPAKHPLPEIEIFCYLIVLIFLIDQKKYADAKACASASIARVKNLNRRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMETALRPYFELTNAVRIGDLELFRTVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHGNGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNDAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 1187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 423643 439601 - CcPI632755_06g000470.1 Cco06g0047 180647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0047 1187 FunFam Non-specific serine/threonine protein kinase 138 477 - -
Cco06g0047 1187 Gene3D Kinase associated domain 1, KA1 523 642 - -
Cco06g0047 1187 SUPERFAMILY Protein kinase-like (PK-like) 144 417 IPR011009 -
Cco06g0047 1187 SUPERFAMILY KA1-like 456 642 IPR028375 -
Cco06g0047 1187 CDD UBA_SnRK1_plant 421 461 - -
Cco06g0047 1187 Pfam Protein kinase domain 147 399 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0047 1187 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 420 460 IPR015940 -
Cco06g0047 1187 MobiDBLite consensus disorder prediction 90 140 - -
Cco06g0047 1187 FunFam 26S proteasome non-ATPase regulatory subunit 3 820 1143 - -
Cco06g0047 1187 FunFam Non-specific serine/threonine protein kinase 137 226 - -
Cco06g0047 1187 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 1045 1138 IPR000717 -
Cco06g0047 1187 SMART PCI/PINT associated module 874 1045 - -
Cco06g0047 1187 Pfam Proteasome regulatory subunit C-terminal 1120 1186 IPR013586 GO:0000502(InterPro)|GO:0030234(InterPro)|GO:0042176(InterPro)
Cco06g0047 1187 Coils Coil 1154 1181 - -
Cco06g0047 1187 Pfam Kinase associated domain 1 600 641 IPR001772 -
Cco06g0047 1187 SUPERFAMILY Winged helix DNA-binding domain 1047 1121 IPR036390 -
Cco06g0047 1187 MobiDBLite consensus disorder prediction 1151 1180 - -
Cco06g0047 1187 ProSiteProfiles Protein kinase domain profile. 147 399 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0047 1187 CDD STKc_AMPK_alpha 144 399 - -
Cco06g0047 1187 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 703 1183 IPR050756 GO:0006511(PANTHER)|GO:0008541(PANTHER)
Cco06g0047 1187 Pfam UBA/TS-N domain 421 457 IPR015940 -
Cco06g0047 1187 ProSiteProfiles PCI domain profile. 939 1120 IPR000717 -
Cco06g0047 1187 ProSitePatterns Protein kinases ATP-binding region signature. 153 176 IPR017441 GO:0005524(InterPro)
Cco06g0047 1187 Gene3D - 954 1136 - -
Cco06g0047 1187 CDD AMPKA_C 517 640 - -
Cco06g0047 1187 MobiDBLite consensus disorder prediction 1151 1187 - -
Cco06g0047 1187 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0047 1187 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 594 642 IPR001772 -
Cco06g0047 1187 MobiDBLite consensus disorder prediction 91 133 - -
Cco06g0047 1187 SMART uba_6 422 459 IPR015940 -
Cco06g0047 1187 Gene3D Transferase(Phosphotransferase) domain 1 140 478 - -
Cco06g0047 1187 FunFam Non-specific serine/threonine protein kinase 523 641 - -
Cco06g0047 1187 Pfam PCI domain 1035 1116 IPR000717 -
Cco06g0047 1187 SMART serkin_6 147 399 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0441 Cco-Chr2:3984225 Cco06g0047 Cco-Chr6:423643 9.10E-253 dispersed
Cco02g1467 Cco-Chr2:27189146 Cco06g0047 Cco-Chr6:423643 1.30E-09 dispersed
Cco02g2259 Cco-Chr2:35144687 Cco06g0047 Cco-Chr6:423643 6.80E-39 dispersed
Cco06g0047 Cco-Chr6:423643 Cco11g0072 Cco-Chr11:746081 3.50E-197 dispersed
Cco06g0047 Cco-Chr6:423643 Cco02g2566 Cco-Chr2:37969250 5.40E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86892 PF00069 Pkinase 1.40E-79 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0047 K07198 - csv:101211720 1007.28