Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0051 | ATGAAAGAGGTGTATGTGGGCCTATATCCTCAGGAGCTCAGATATGACTCTACTGTGTGTTGGATGTTGGGCACTTTGGTTAGACAAGACTTTGGTGAATTAGAACTTGCCCATCTCATAAATCGAATGTTGAATGGATCCTTGGTTTTATCCAAGAGTTGCAGCCGATCAAAGTTGCGCCAGGGGGTTCTGTTAGTTTTTGTGACTCGTGTGCCAAAAAAGGAAAGTGAGAGGTCGTTGCGCGCTCCCGCATCGGTCCCAACATCCATCGGTACGCCCCGTTGCCCTCTCCCTTCACTCCCAACCAGCATTCACCTCTTTCTTCCTCAGATCTACACTCTACATCGCCCTCACTCTCAGGTTTTCTTCTCCTCTTTCTCCTACATCACTTACAGAATGATTTATTCTGTGTTCACGGACATTCGAAACGCCGATTGTCGTTTCGTATCTCGTTCTTGTCCGTCTTTGTTTTGCATTAATCGATTAGCTCCAATTCTAGATCTGGCTTTTCAAGCATTGCAGTTGAAGATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATTGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATTCAGGAGAGAGAATACAACAAACAAAAGAGTTGCTTGCTTCTTGTGAAAGCATTGAATGGCAGGTGGACGAGTTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCATCTTGGTATGGCATTGATGATGCAGAACTTGAAAAACGAAGGAGATGGACGAGTACTGCTAGAACACAGGTTGGAAATGTTAAGAAAGTAGTAGGAGCTGGGAAGGAGCAAACGGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACATGAAACAGACAGATCAAACTTATATACAGCCAACCAAGCAAATGATGACTTCATCACATCCGAATCAGATAGACAGCTGCTTCTAATAAAGCAGCAGGATGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACACGAAGAGCTCCTTGCACAGGATAAAATTATCGACGACCTAGGAATGGAAATGGACAGTACATCAAATCGTCTTGATTTTGTTCAGAAAAAAGTAGCAGTGGTCATGAAGAAGGCCAGCGCCAAGGGGCAGATAATGATGATATTGTTCTTGGTGGCTTTGTTCATCATCCTTTTTGTGTTGGTGTTCCTCACCTAG | 1269 | 44.29 | MKEVYVGLYPQELRYDSTVCWMLGTLVRQDFGELELAHLINRMLNGSLVLSKSCSRSKLRQGVLLVFVTRVPKKESERSLRAPASVPTSIGTPRCPLPSLPTSIHLFLPQIYTLHRPHSQVFFSSFSYITYRMIYSVFTDIRNADCRFVSRSCPSLFCINRLAPILDLAFQALQLKMPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDSGERIQQTKELLASCESIEWQVDELDKAIAVAARDPSWYGIDDAELEKRRRWTSTARTQVGNVKKVVGAGKEQTGTASASGMRRELMRLPNAHETDRSNLYTANQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKIIDDLGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLVFLT | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 472773 | 477726 | - | CcPI632755_06g000510.1 | Cco06g0051 | 180651 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0051 | 422 | FunFam | Syntaxin 10 | 179 | 281 | - | - | |
Cco06g0051 | 422 | CDD | SNARE_Qc | 333 | 390 | - | - | |
Cco06g0051 | 422 | SUPERFAMILY | SNARE fusion complex | 329 | 392 | - | - | |
Cco06g0051 | 422 | Gene3D | - | 337 | 401 | - | - | |
Cco06g0051 | 422 | PANTHER | SYNTAXIN | 184 | 409 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cco06g0051 | 422 | SMART | tSNARE_6 | 325 | 392 | IPR000727 | - | |
Cco06g0051 | 422 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 330 | 392 | IPR000727 | - | |
Cco06g0051 | 422 | SUPERFAMILY | t-snare proteins | 181 | 276 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cco06g0051 | 422 | FunFam | syntaxin-61 isoform X1 | 333 | 394 | - | - | |
Cco06g0051 | 422 | Gene3D | - | 178 | 280 | - | - | |
Cco06g0051 | 422 | Pfam | Syntaxin 6, N-terminal | 182 | 275 | IPR015260 | GO:0016020(InterPro)|GO:0048193(InterPro) | |
Cco06g0051 | 422 | ProSitePatterns | Syntaxin / epimorphin family signature. | 336 | 375 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cco06g0051 | 422 | CDD | SNARE_NTD_AtSYP61-like | 181 | 278 | - | - | |
Cco06g0051 | 422 | Pfam | SNARE domain | 367 | 418 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0051 | Cco-Chr6:472773 | Cco10g0456 | Cco-Chr10:5415548 | 7.70E-06 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0051 | K08500 | - | csv:101212527 | 420.624 |