Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0051 ATGAAAGAGGTGTATGTGGGCCTATATCCTCAGGAGCTCAGATATGACTCTACTGTGTGTTGGATGTTGGGCACTTTGGTTAGACAAGACTTTGGTGAATTAGAACTTGCCCATCTCATAAATCGAATGTTGAATGGATCCTTGGTTTTATCCAAGAGTTGCAGCCGATCAAAGTTGCGCCAGGGGGTTCTGTTAGTTTTTGTGACTCGTGTGCCAAAAAAGGAAAGTGAGAGGTCGTTGCGCGCTCCCGCATCGGTCCCAACATCCATCGGTACGCCCCGTTGCCCTCTCCCTTCACTCCCAACCAGCATTCACCTCTTTCTTCCTCAGATCTACACTCTACATCGCCCTCACTCTCAGGTTTTCTTCTCCTCTTTCTCCTACATCACTTACAGAATGATTTATTCTGTGTTCACGGACATTCGAAACGCCGATTGTCGTTTCGTATCTCGTTCTTGTCCGTCTTTGTTTTGCATTAATCGATTAGCTCCAATTCTAGATCTGGCTTTTCAAGCATTGCAGTTGAAGATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATTGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATTCAGGAGAGAGAATACAACAAACAAAAGAGTTGCTTGCTTCTTGTGAAAGCATTGAATGGCAGGTGGACGAGTTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCATCTTGGTATGGCATTGATGATGCAGAACTTGAAAAACGAAGGAGATGGACGAGTACTGCTAGAACACAGGTTGGAAATGTTAAGAAAGTAGTAGGAGCTGGGAAGGAGCAAACGGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACATGAAACAGACAGATCAAACTTATATACAGCCAACCAAGCAAATGATGACTTCATCACATCCGAATCAGATAGACAGCTGCTTCTAATAAAGCAGCAGGATGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACACGAAGAGCTCCTTGCACAGGATAAAATTATCGACGACCTAGGAATGGAAATGGACAGTACATCAAATCGTCTTGATTTTGTTCAGAAAAAAGTAGCAGTGGTCATGAAGAAGGCCAGCGCCAAGGGGCAGATAATGATGATATTGTTCTTGGTGGCTTTGTTCATCATCCTTTTTGTGTTGGTGTTCCTCACCTAG 1269 44.29 MKEVYVGLYPQELRYDSTVCWMLGTLVRQDFGELELAHLINRMLNGSLVLSKSCSRSKLRQGVLLVFVTRVPKKESERSLRAPASVPTSIGTPRCPLPSLPTSIHLFLPQIYTLHRPHSQVFFSSFSYITYRMIYSVFTDIRNADCRFVSRSCPSLFCINRLAPILDLAFQALQLKMPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDSGERIQQTKELLASCESIEWQVDELDKAIAVAARDPSWYGIDDAELEKRRRWTSTARTQVGNVKKVVGAGKEQTGTASASGMRRELMRLPNAHETDRSNLYTANQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKIIDDLGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLVFLT 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 472773 477726 - CcPI632755_06g000510.1 Cco06g0051 180651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0051 422 FunFam Syntaxin 10 179 281 - -
Cco06g0051 422 CDD SNARE_Qc 333 390 - -
Cco06g0051 422 SUPERFAMILY SNARE fusion complex 329 392 - -
Cco06g0051 422 Gene3D - 337 401 - -
Cco06g0051 422 PANTHER SYNTAXIN 184 409 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cco06g0051 422 SMART tSNARE_6 325 392 IPR000727 -
Cco06g0051 422 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 330 392 IPR000727 -
Cco06g0051 422 SUPERFAMILY t-snare proteins 181 276 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cco06g0051 422 FunFam syntaxin-61 isoform X1 333 394 - -
Cco06g0051 422 Gene3D - 178 280 - -
Cco06g0051 422 Pfam Syntaxin 6, N-terminal 182 275 IPR015260 GO:0016020(InterPro)|GO:0048193(InterPro)
Cco06g0051 422 ProSitePatterns Syntaxin / epimorphin family signature. 336 375 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cco06g0051 422 CDD SNARE_NTD_AtSYP61-like 181 278 - -
Cco06g0051 422 Pfam SNARE domain 367 418 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0051 Cco-Chr6:472773 Cco10g0456 Cco-Chr10:5415548 7.70E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0051 K08500 - csv:101212527 420.624