Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0062 ATGGCCTACCGACCCAACCATTCCCCCAACGCTTTTTTCAATCATTATTCTCCCCAGGCCTCCGCCATGAAAATAAAGCAGAGAAAACCTCCACAAATTCCCCTTCTTCCAATCAAAAAACAGAAAATGATGCTGAACCAACCTGGACAATGGGTGGTGCTGGTGGCGGCAATATGGATTCAGGCATTTGCCGGCACAAATTTTGATTTCCCCTCTTATTCTTCCGATCTGAAGGCGGCTCTGGGGATGTCGCAGGTGGAGCTCAACTATCTGGCGGTGGCTTCCGACCTTGGCAAGGCCTTCGGGTGGTGCTCTGGCGTCGCTCTCTTATATTTTCCTTTGTGGGTGGTGATGTTCATGGCTGCTTCCATGGGGTTTCTTGGCTATGGCCTCCAATGGCTTCTCCTTCAAAGGATTGTCTCTCTGCCTTACTCCATGGTTTATCTTCTCTGCTTGATGGCTGGATGTAGTATTTGCTGGTTCAACACGGTCTGCTATGTCTCATGTATCCAAAATTTTCCAGCCAACCGTGCCCTTGCATTGTCCTTGATTGTCAGCTTCAATGGCGTCAGTGCAGCTCTATACACCCTAATAGCCAATGCAGTAGACCCCAATGATGCCGGTTTGTACCTCTTCCTAAATGCACTGGTTCCTCTCATCATCTCTATCGTTGCCCTCCTCCCAATCCTTCATCAGCCAACAGTTCAACCATCCTCTGCTGATGCCATCCGCCATGACTCTCTCATCTTCATATGCTTATACATCACGGCCGTTATCACAGGGGTGTACTTAATCACCTTCAATTCCAAGCCTTCCTACAAATACAGGTCCCAAATTCTGTTAGCAGGGGCTCTTGCCCTTTTACTAGTTCCTCTTTGTTTGCCAGGAATTCTTAGTACACGCAGGTGGTTGGCTCGGATCATATCCACCAGCTTGAGCCATCTTATTCACTCTAGATTTAACCTTGTTGATCATGAGCTTCACCAGGAGCTCATTGCTGTTGGAACAGAACGAAATGGTATGAAGGTCATCATCCCTTTTGATTCTAAAGAGAAGGAAAGCACTTCGAGGAAGGTGATGGAGAAAGAGAACTTGGTAATGCTTGAAGAAGAGCATTCGGCTAAGATGCTGTTGCGACGGTTGGACTTTTGGCTCTATTATGTTGCATACTTTTGTGGTGGTACGATTGGGTTGGTTTACAGCAACAATCTTGGACAAATTGCACAGTCGCTTGGATATAGTTCGTCAACAAGTTCACTTGTAACACTCTACTCTTCTTGCTCCTTCTTTGGGCGGTTAATCTCAGCAGCCCCAGATTTCATGCGTGAAAAGGTGCGTTTCGCCAGAACAGGGTGGCTAGCCATTGCACTGGTGCCAACTCCAATCGCCTTCATTTTACTCGCTGCATCAGGCAGCAAAATCGCATTACAAGCTGGCACTGGCTTGATCGGCCTAAGCTCGGGATTCATATTTTCAGCCTCAGTCTCAATCACATCAGAGTTATTCGGACCGAACAGTTCAGGGGTCAACCACAACATCCTCATCACTAACATCCCTCTTGGCTCATTCCTCTACGGCGTCCTGGCGGCAGTGGCGTACGATTCAAACGCCGAAAGTTCACACCAGACGGCGGCGCTGGGGGACGCGGTAGTGTGCATCGGCCAGAATTGCTATCTGCAGACGTTCGTATGGTGGGCTTGCATCTCCATCTTCGGCCTGGCTTCTAGCTTCTTGCTTTTCCGACGGACGAGACCGGCTTACGACCGCCATTACGAGAGTAACCTAAGCAAGATGCAGCCATGTTAG 1806 48.73 MAYRPNHSPNAFFNHYSPQASAMKIKQRKPPQIPLLPIKKQKMMLNQPGQWVVLVAAIWIQAFAGTNFDFPSYSSDLKAALGMSQVELNYLAVASDLGKAFGWCSGVALLYFPLWVVMFMAASMGFLGYGLQWLLLQRIVSLPYSMVYLLCLMAGCSICWFNTVCYVSCIQNFPANRALALSLIVSFNGVSAALYTLIANAVDPNDAGLYLFLNALVPLIISIVALLPILHQPTVQPSSADAIRHDSLIFICLYITAVITGVYLITFNSKPSYKYRSQILLAGALALLLVPLCLPGILSTRRWLARIISTSLSHLIHSRFNLVDHELHQELIAVGTERNGMKVIIPFDSKEKESTSRKVMEKENLVMLEEEHSAKMLLRRLDFWLYYVAYFCGGTIGLVYSNNLGQIAQSLGYSSSTSSLVTLYSSCSFFGRLISAAPDFMREKVRFARTGWLAIALVPTPIAFILLAASGSKIALQAGTGLIGLSSGFIFSASVSITSELFGPNSSGVNHNILITNIPLGSFLYGVLAAVAYDSNAESSHQTAALGDAVVCIGQNCYLQTFVWWACISIFGLASSFLLFRRTRPAYDRHYESNLSKMQPC 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 579238 582179 + CcPI632755_06g000620.1 Cco06g0062 180662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0062 601 Gene3D MFS general substrate transporter like domains 279 575 IPR036259 -
Cco06g0062 601 SUPERFAMILY MFS general substrate transporter 256 586 IPR036259 -
Cco06g0062 601 SUPERFAMILY MFS general substrate transporter 16 230 IPR036259 -
Cco06g0062 601 Pfam Nodulin-like 50 295 IPR010658 -
Cco06g0062 601 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 50 589 - GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0020 Cco-Chr3:238104 Cco06g0062 Cco-Chr6:579238 5.20E-76 dispersed
Cco03g0023 Cco-Chr3:261956 Cco06g0062 Cco-Chr6:579238 5.20E-76 dispersed
Cco06g0062 Cco-Chr6:579238 Cco07g1201 Cco-Chr7:25880517 1.40E-173 dispersed
Cco06g0062 Cco-Chr6:579238 Cco02g1280 Cco-Chr2:24409518 1.10E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0062 - - - 0.0