Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0090 ATGTATCAAACTATTAATATACTTTATATTCCAAAGGAAAGACACTCGGTCTCAGTTGCTATACCTTTTCCTCTTATTTTTTGGCTGGCTCAACTCACTTTCTTCCTTCTGCCTTTTCCTAGGGCTTTCTTCACCAACTTCAGCTTTCTTCTCCTCTCAACCGAGATGGAAGTGCAAGATCATGGTCACATAATTGAAGTGTGTGGAGATGTGCAAGCTGTAGGGCCTAGCACTGTGGGAAGTAAAATTTGTGGGGATGCACCCTCTTGTGGATTTTCTGATGCAAAAAGCAGTTCAAAAGATGCAAAGGAGCGATCTGCGTCTATGCGGAAGCTTTGCATAGCAGTTGTTCTCTGCATCGTTTTTATGAGTGTAGAAGTAGTCGGAGGTATTAAAGCAAACAGTCTTGCAATATTGACTGATGCTGCTCATTTGTTGTCAGATGTTGCTGCTTTTGCCATTTCTTTATTCTCACTCTGGGCCTCTGGTTGGGAGGCAACTCCACGTCAGTCATATGGTTTCTTCCGCATTGAAATACTCGGTGCTCTCGTTTCCATTCAGATGATCTGGCTTCTAGCTGGAATTCTTGTTTACGAAGCTATCGTCCGACTTATAAATGGTCCGGGAGAAGTCAAGGGGTTGCTCATGTTTGCTGTTTCGACATTTGGGTTAGTTGTTAACATAGCTATGGCTCTGCTGCTTGGTCACGAACATGGTCATGCCCATTCTCATGGTCACAGTCATGGACATGGTGAGCATGGCCATGGTCATGGCGGCCATGAACATGGTGATGAAGATCATAGGCATCATCATGGAATAAGTGTGACCACCCACCACCATCACCACCACCACCACCATGGAGAAGAGAAGGAAGCTGGCAGCGAAGGTGTTGAGCAGCAGCAGCAGCATCATGACCACAAGGAATCAGTAGCTACGCCCTTGCTTGAGAGTTGTGTTGACGACGGAAATCCTTCACGAAAGGTTACCAAGATGCGAAAGAAACAACGAAACATAAACGTACAGGGGGCTTATCTTCATGTACTTGGAGATTCCATCCAAAGCATCGGGGTAATGATCGGCGGGGCAATCATATGGTATAAACCGGAATACAAGATTCTTGATCTGATATGCACCCTCATTTTCTCTGCAATTGTGCTGTGCACAACAATTCAAATGCTTCGAAATATCCTCGAGGTTTTGATGGAGAGCACGCCGCGAGAGGTGGACGCAACAAAGCTTGAGAAGGGTTTGTGCGAGATGGAGGAGGTAGTTGCAATCCATGAACTGCACATATGGGCCATAACTGTTGGGAAGATTCTATTGGCATGCCATGTTATAATAAAGCCAGAGGCAAATGCCGACATGGTATTGGACAAGGTTATTGAGTATATTAGAAGAGAGTACAACATCAGCCATGTCACCATTCAGATAGAGCGCCAGTAG 1443 45.25 MYQTINILYIPKERHSVSVAIPFPLIFWLAQLTFFLLPFPRAFFTNFSFLLLSTEMEVQDHGHIIEVCGDVQAVGPSTVGSKICGDAPSCGFSDAKSSSKDAKERSASMRKLCIAVVLCIVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGLLMFAVSTFGLVVNIAMALLLGHEHGHAHSHGHSHGHGEHGHGHGGHEHGDEDHRHHHGISVTTHHHHHHHHHGEEKEAGSEGVEQQQQHHDHKESVATPLLESCVDDGNPSRKVTKMRKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEYKILDLICTLIFSAIVLCTTIQMLRNILEVLMESTPREVDATKLEKGLCEMEEVVAIHELHIWAITVGKILLACHVIIKPEANADMVLDKVIEYIRREYNISHVTIQIERQ 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 838235 844106 - CcPI632755_06g000900.1 Cco06g0090 180690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0090 480 NCBIfam cation diffusion facilitator family transporter 109 480 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco06g0090 480 SUPERFAMILY Cation efflux protein transmembrane domain-like 106 402 IPR027469 -
Cco06g0090 480 MobiDBLite consensus disorder prediction 252 272 - -
Cco06g0090 480 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 409 478 IPR036837 -
Cco06g0090 480 Gene3D Cation efflux protein transmembrane domain 108 400 IPR027469 -
Cco06g0090 480 MobiDBLite consensus disorder prediction 239 334 - -
Cco06g0090 480 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 78 479 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
Cco06g0090 480 Pfam Cation efflux family 113 401 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco06g0090 480 MobiDBLite consensus disorder prediction 287 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0122 Cco-Chr3:1211555 Cco06g0090 Cco-Chr6:838235 1.80E-73 dispersed
Cco06g0090 Cco-Chr6:838235 Cco10g1449 Cco-Chr10:27616132 6.00E-15 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0090 K14689 - csv:101213602 646.736