Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0096 ATGGCGAATCTCGTTCCTGGAGTGCTTCTCAAACTACTGCAGCACATGAACACAGATGTGAAGGTTGCTGGAGAGCACAGGTCGACGTTGTTACAAGTTGTGAGCATAGTTCCGGCACTGGCCGGCGGCGATCTCTCACCGAATCAAGGTTTTTATCTCAAAGTCTCTGATTCTTCTCATGCCACATATGTCTCACTCCCTGATGAACATGGTGATCTGATTCTTAGTGACAAGATTCAATTGGGTCAGTTTATTCATGTCGAACGGCTTGAGGCTGCTTCACCAGTCCCCATTCTTCACGGAGTTCGACCGGTGCCCGGTCGACACCCTTGTGTGGGGAGCCCTGAAGATATTGTTGCTACTCATTCTCCTGGGTTTCTTAACAATAATCCTAATTTGAAACCTTTGGACAAATTGAAACCGACCCCAAAAGTTTTAGGCCTCAGCATTGGTGGGGAAAAGGAGAAATCTGCGCCTGTGAGACTCAATGGCAATGCCAAGGAGGATAAGATTGACAAGAGAGCCTCACCCTTGAGCAGATCCAAGTCTCAGGCGTCAAAATTGACAGTGAATGTAGATGTGAAGAAGGAGCCTCTAACGAGACTAAAGTCGATGAATTCACGGTCGATACCCTCATCTCCAACAAGCTGTTATTCATTGCCTTCTTCATTTGAGAAGTTTGCCAACAGCATTAAGCAGCAGGGGAAGGTTAAGGCGTTGGCTAATGGAGCAACCAAAGTAGGGGCAGTTGAAAAGTCGAATCCTGTTCGTTCAGCCAGTCCTGTCCCCAAGAAAATGGGAGTGGGACATCAGATCAAACATTTAGTTCAGGGCATTGAGGTTGGGGCCAAGGCTCTGAGGAAGAGCTGGGAAGGGAATATGGAGACCAAAAGAAGAGACAATTCGATATTAAGAGCAAGCAAACTTGATCTCAAGCCTGAAGCTCGGGTTACTACTCCTAGAAGAAGTACATCAAGTGAAAAGTTGCCATCAAGAGAGGAGAATAGGATTCAGGTGCCTGCAAAGTCATCTAAAGATGATCATAGCTTGCACGCATCTTCAAAGAAGAATGCCGCTAGTGGAGCTTTAGATAATCAGGAAAGGTCAAATAGACAAAAATCTTCTAGTGGAAGGAAATCCTCCTCAAGTGATGCAGCCGGATTCCCTGGAAACTTGGTGAAGATTCCTCTTAGTCATAAAAGATTGAGTGAAGGGAGTGTTTCATGGGCTTCACTTCCATCATCTCTTGCCAAGCTTGGAAAGGAAGTAATGAGGCATAGAGATGCTGCACAAGCAGCAGCTATAGAGGCTATTCAAGAAGCTTCGGTGGCAGAGAGCTGTCTACGATGTTTGAGTATATTTTCTGAGTTAAACACTGCTGCAAAAGAGGACAATCCACAGCCTGCGGTAGAACAGTTTTTGACCCTTCATGCGAGCCTAACCAATGCTCACATGGTAGCTGAATCTCTTTCGAAAACTAGTCTCTCTGGTTCAACCAATGAGAGCGAAGAAACCGCTTCAGAAGAAACAATGAAGGTCACATTAATGGCGAGAAAACAGGCTTCTGCTTGGGTTCAGGCTGCTTTAGCCACTAACCTTTCATCTTTTGCAGTTTACAGCCGTGATCCATCCTTGGCTCTAAACCCGACCCCGACTTTATCTCTATCTCAAAACCAAAAGAGTGCATCTGCAAATCAGCCGATAGTAGTTTTAGAAAACTCATCTAAGAACAGCTCGTCAAAATCCCAAGGGAAGGTCCGCCAGATGATAAGCTCTAAACCTATTGGATCAGGAAATCAAAGTCGAACAAAGGAAGGAGCGACACTCGGTCAGAAGGTGCAGCCTCAACCTCCACCAGAATGGGTCAGAGGAAACGGTCTTGACGAAGCAGTTGACTTAGCCGAGATGTTACGGCTGCAATCCCAGAACTGGTTCTTGACATTCATGGAAAGGTTCTTGGATGCAGGTGTTGACACTGCAGCCTTGTCAGATAATGGACAATTAGCAGGAATATTGACTCAGCTGAAGAGTGTAAACGACTGGTTAGATGGCATAGCTTCTACCAAGGACGAAGGAGACACCACCCACATTTCGACTGAGACAATTGACAGGCTGAGGAAGAAGATCTACGAGTATCTTCTCATGCACGTCGAGTCTGCAGCTGCTGCACTCGGCGGGGGATCGCAGCCACTGCCACAGCAGATACAAGCAACCGAAACAAAAGCAAGAAGACGAAAAGTGGCCATTACTGGTAAGGAAGGATTAAGGACCCAAAGGGACTCCGACGTTACAGAGATGCCTTCCAACAGCTTGTGGGTTGGCAACTTATCCACGGATGTCACCGATGCGGATCTCATGAATTTGTTTGCGCAGTTTGGTGCGCTTGATAGTGTTACTTCCTATTCCTCCAGGAGCTACGCTTTCATCTTCTTCAAGCACATGGAGGATGCCCAAGCTGCCAAAGAGGCTCTTCAGGGTTTTTTTCTGCGTGGGAATTCTATCAAAATCGAGTTTGCTAGACCGGCCAAACCTTGTAGGAATTTGTGGGTGGGTGGTATTAGCCCAGCTGTTTCAAGGGAACAACTTGAAGAAGAATTTTCCAAATTTGGTAAAATTGATGACTTTAAGTTTTTGCGAGATCGGAATACGGCATTTGTTGAGTATGTTCGATTGGAAGATGCATCACAAGCTTTGAGAATGATGAATGGGAAACGCATTGGTGGAGACCAGATTCGAGTTGATTTTCTTCGGTCACAGCCAGTGAGAAGAGATCAGTGGCCAGACACCAGAGATGGGCATGGTCAGCTTCAGGGTAGAAATGTGGGGATGGGTGATTTCCAATCGGGTTATAAAAGACCACTGCATGCTCAATCTTCTGAAATGCGTAGAGATGGACCTCCCAGTAAGGTTTTGTGGATTGGTTACCCTCCATCTGTTCAAATTGATGAACAAATGCTCCACAATGCGATGATTTTATTTGGTGAGATAGAGAGAATTACGAGTTTCCATTCTAGGCATTTTGCATTTGTAGAATTTAGAAGTGTTGATGAAGCACGGCGTGCTAAGGAGGGTCTACAAGGACGGCTTTTTAATGATCCTCGGATTACTATTATGTTTTCAAACAGTGATCCGGGACCTGTAAAAGAGCACCCTGGCTTTTATCCTGGTGGTAAAGAGGCTAGGCCTGATATGTTCTTCAATGAGCATCAAATCCGTCCTCCACAAATGGACCTGTTGGGACATCCTCATCCATTGGTGCAAAATAAGTTTCCTGGACCACTACCATCTAGTGGCATTCTTGGACCAAATACAGCAGTAAGACCGCCACCCTTTGGTCCTCCACAGGGTATCTCAGGGCCCCCTGAGTTTAACGACTTAGCCACGTCTCATAGTTTCCAGGATGCAAATTCAAAAAATATGATGGGTCCAAATTGGAGAAGGCAATCTCCTCCTGCACCCGGGATACTTTCTTCTCCAGCTACTGGTATTCGTCCACCTCCACCAGTGAGGACCACTCCAAATTCATGGGATGTTTTGGATGTAAATCAATTCCAAAGGGATTCTAAACGATCAAGGATAGATGGTCCGGCATCCTTAGACGATGCTTCTTTTCCTCCAAGAAAACTGGATAACCGGGGCATGGGTTTTGATCAGCAATATGGGGTTGGTCCAATAAGTGATGGAGGTTCTTCTGTTCCATATGCCAATGCTCCAGCTAAGGCTCCTGCTATTCCTATAGGTGCAAGGGCCCCAGTTAGTGGTCCTGGCCAGAGCCATGCTGAAAATGATTTTATATGGCGGGGAATAATTGCCAAGGGAGGAACACCTGTTTGTCATGCTCGTTGTGTCCCAATTGGTGAAGGAATAGGAAGTGAGCTTCCTGAAGTAGTCAATTGTTCAGCAAGAACTGGGCTGGATCAGCTCACTAAACATTATGCTGAAGCCACAGGATTCGACATTGTCTTTTTCTTGCCAGATAGTGAGGATGATTTTGCATCGTATACTGAATTCCTGCGTTACCTAGGTGCGAAAAACCGTGCAGGTGTTGCTAAGTTTGATGATGGAACTACAATGTTTTTGGTTCCTCCTTCAGAGTTTCTGAGAAAAGTCTTGAAAGTTTCTGGTCCTGAACGGCTTTATGGTCTCGTTCTCAAATTTCCTCAGGTGTCTATTAGTGAACCTGCTCCCCAACAGTCATATCTACCCATTCCTACATCTGACTATGGTGAGAGACAACATGTTTTGCCTTCACAAACTGAATATGGATCAGTGCCTTCAAAGCAGGAGCAACTTCCTCCAATGGATTATAGTAGGGTTTTGCATGACGAAACCAAGGAACTCCCAAAACCGCTTCTGCCCACAAGTGAGCCACCACCACTGGCAGTTCAGCCCTTGCCTCAAGAGTATTCTGGTAACAATAATACAGCTGCAATCTCGCAAGCTGGGTTAGCATTAACACCCGAGCTTATTGCCACATTGGTTTCTTTACTGCCTGGCAAGACACAGTCATCCAGCTTAGATAGTGCCAAACAACCAGCAGTCTCACCACAACCTCCAATTCCTCCTGTTGTTTCTAATAAAGGGGCTACATCTGAGGGATGGATGGTAGGTCATCAATCTTCTGATCTAACCGGTCAGCCATTTCAGCAAATGGGGAATCATTTTAATCCTCAGGGACAGAGCCTTTCTCAATTTCAGCCTTATCCACCCCTCCCCCAGACACCTAACCAGCTTGCACCGCAAATTGGAACAAGCCAAATCCAAGATGCTGCTGTCAGTCTGCCACAGCAGCAGCAGGTACCGATTCCTTACAGGCCTTTGTCTACTTATTCCGCCCCTCCTGAAAATGCACAAGCTTCTGGTTTGGCCTTGGTCAATTCTCAGTATCAGCATGATGTCTCGCAAATTAGCCAGAGAGGTTATGGGTCAGTCAATGGAGTTGATACTTCTGGGTATGGTGCACCAGTTATGCAGCAATCAACAAATACTGTGACCTTATCTAATCAAGTTCAGGGTTCTACTACACAGTCACAACCTATTACTCAATTAGCATCAGATAGGGTGAACCCCCCTGAGCTTCCTTATCAGATGCAGCATTTGCAATCTGCGAACCTCGGCACTGGCAGTGGGACCAATTCAGCAGCAGCAGCAGCAGCAGCAACAGCAAGCAGGCTGGGGTTCAGGAAATCAATAGTGAACAGCCCTTCGTTTAGGTAA 5217 46.12 MANLVPGVLLKLLQHMNTDVKVAGEHRSTLLQVVSIVPALAGGDLSPNQGFYLKVSDSSHATYVSLPDEHGDLILSDKIQLGQFIHVERLEAASPVPILHGVRPVPGRHPCVGSPEDIVATHSPGFLNNNPNLKPLDKLKPTPKVLGLSIGGEKEKSAPVRLNGNAKEDKIDKRASPLSRSKSQASKLTVNVDVKKEPLTRLKSMNSRSIPSSPTSCYSLPSSFEKFANSIKQQGKVKALANGATKVGAVEKSNPVRSASPVPKKMGVGHQIKHLVQGIEVGAKALRKSWEGNMETKRRDNSILRASKLDLKPEARVTTPRRSTSSEKLPSREENRIQVPAKSSKDDHSLHASSKKNAASGALDNQERSNRQKSSSGRKSSSSDAAGFPGNLVKIPLSHKRLSEGSVSWASLPSSLAKLGKEVMRHRDAAQAAAIEAIQEASVAESCLRCLSIFSELNTAAKEDNPQPAVEQFLTLHASLTNAHMVAESLSKTSLSGSTNESEETASEETMKVTLMARKQASAWVQAALATNLSSFAVYSRDPSLALNPTPTLSLSQNQKSASANQPIVVLENSSKNSSSKSQGKVRQMISSKPIGSGNQSRTKEGATLGQKVQPQPPPEWVRGNGLDEAVDLAEMLRLQSQNWFLTFMERFLDAGVDTAALSDNGQLAGILTQLKSVNDWLDGIASTKDEGDTTHISTETIDRLRKKIYEYLLMHVESAAAALGGGSQPLPQQIQATETKARRRKVAITGKEGLRTQRDSDVTEMPSNSLWVGNLSTDVTDADLMNLFAQFGALDSVTSYSSRSYAFIFFKHMEDAQAAKEALQGFFLRGNSIKIEFARPAKPCRNLWVGGISPAVSREQLEEEFSKFGKIDDFKFLRDRNTAFVEYVRLEDASQALRMMNGKRIGGDQIRVDFLRSQPVRRDQWPDTRDGHGQLQGRNVGMGDFQSGYKRPLHAQSSEMRRDGPPSKVLWIGYPPSVQIDEQMLHNAMILFGEIERITSFHSRHFAFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSNSDPGPVKEHPGFYPGGKEARPDMFFNEHQIRPPQMDLLGHPHPLVQNKFPGPLPSSGILGPNTAVRPPPFGPPQGISGPPEFNDLATSHSFQDANSKNMMGPNWRRQSPPAPGILSSPATGIRPPPPVRTTPNSWDVLDVNQFQRDSKRSRIDGPASLDDASFPPRKLDNRGMGFDQQYGVGPISDGGSSVPYANAPAKAPAIPIGARAPVSGPGQSHAENDFIWRGIIAKGGTPVCHARCVPIGEGIGSELPEVVNCSARTGLDQLTKHYAEATGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFDDGTTMFLVPPSEFLRKVLKVSGPERLYGLVLKFPQVSISEPAPQQSYLPIPTSDYGERQHVLPSQTEYGSVPSKQEQLPPMDYSRVLHDETKELPKPLLPTSEPPPLAVQPLPQEYSGNNNTAAISQAGLALTPELIATLVSLLPGKTQSSSLDSAKQPAVSPQPPIPPVVSNKGATSEGWMVGHQSSDLTGQPFQQMGNHFNPQGQSLSQFQPYPPLPQTPNQLAPQIGTSQIQDAAVSLPQQQQVPIPYRPLSTYSAPPENAQASGLALVNSQYQHDVSQISQRGYGSVNGVDTSGYGAPVMQQSTNTVTLSNQVQGSTTQSQPITQLASDRVNPPELPYQMQHLQSANLGTGSGTNSAAAAAAATASRLGFRKSIVNSPSFR 1738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 875593 896117 - CcPI632755_06g000960.1 Cco06g0096 180696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0096 1738 MobiDBLite consensus disorder prediction 326 353 - -
Cco06g0096 1738 SUPERFAMILY RNA-binding domain, RBD 760 843 IPR035979 GO:0003676(InterPro)
Cco06g0096 1738 SUPERFAMILY RNA-binding domain, RBD 843 941 IPR035979 GO:0003676(InterPro)
Cco06g0096 1738 MobiDBLite consensus disorder prediction 1187 1212 - -
Cco06g0096 1738 FunFam Flowering time control protein FPA 761 843 - -
Cco06g0096 1738 MobiDBLite consensus disorder prediction 1448 1468 - -
Cco06g0096 1738 PANTHER EXPRESSED PROTEIN 1 724 IPR010341 -
Cco06g0096 1738 MobiDBLite consensus disorder prediction 148 188 - -
Cco06g0096 1738 MobiDBLite consensus disorder prediction 572 621 - -
Cco06g0096 1738 Pfam RNA recognition motif 848 912 IPR000504 GO:0003723(InterPro)
Cco06g0096 1738 Pfam RNA recognition motif 981 1035 IPR000504 GO:0003723(InterPro)
Cco06g0096 1738 Pfam RNA recognition motif 771 835 IPR000504 GO:0003723(InterPro)
Cco06g0096 1738 MobiDBLite consensus disorder prediction 354 387 - -
Cco06g0096 1738 MobiDBLite consensus disorder prediction 1501 1522 - -
Cco06g0096 1738 SUPERFAMILY RNA-binding domain, RBD 964 1048 IPR035979 GO:0003676(InterPro)
Cco06g0096 1738 MobiDBLite consensus disorder prediction 292 390 - -
Cco06g0096 1738 MobiDBLite consensus disorder prediction 160 177 - -
Cco06g0096 1738 CDD RRM_SF 771 837 - -
Cco06g0096 1738 Pfam Domain of unknown function (DUF6857) 397 724 IPR049172 -
Cco06g0096 1738 MobiDBLite consensus disorder prediction 292 317 - -
Cco06g0096 1738 MobiDBLite consensus disorder prediction 923 942 - -
Cco06g0096 1738 CDD RRM_SF 976 1038 - -
Cco06g0096 1738 SMART rrm1_1 847 914 IPR000504 GO:0003723(InterPro)
Cco06g0096 1738 SMART rrm1_1 770 837 IPR000504 GO:0003723(InterPro)
Cco06g0096 1738 SMART rrm1_1 970 1038 IPR000504 GO:0003723(InterPro)
Cco06g0096 1738 CDD RRM_SF 848 914 - -
Cco06g0096 1738 Gene3D - 955 1046 IPR012677 -
Cco06g0096 1738 Gene3D - 732 843 IPR012677 -
Cco06g0096 1738 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 769 841 IPR000504 GO:0003723(InterPro)
Cco06g0096 1738 CDD SPOC_FPA-like 1265 1385 - -
Cco06g0096 1738 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 969 1042 IPR000504 GO:0003723(InterPro)
Cco06g0096 1738 Pfam SPOC domain 1258 1385 IPR012921 -
Cco06g0096 1738 Pfam Plant protein of unknown function (DUF936) 4 120 IPR048297 -
Cco06g0096 1738 MobiDBLite consensus disorder prediction 1139 1175 - -
Cco06g0096 1738 Gene3D - 844 954 IPR012677 -
Cco06g0096 1738 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 846 918 IPR000504 GO:0003723(InterPro)
Cco06g0096 1738 MobiDBLite consensus disorder prediction 572 610 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0096 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1147 Cco-Chr2:19566905 Cco06g0096 Cco-Chr6:875593 2.80E-69 dispersed
Cco06g0096 Cco-Chr6:875593 Cco06g1192 Cco-Chr6:21434360 1.30E-62 dispersed
Cco06g0096 Cco-Chr6:875593 Cco05g2228 Cco-Chr5:31020028 1.40E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41