Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0100 ATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAAGCTTCTTCAACCAAAGCCATGATCATCATCTTCATCATCTTCACTTCTCCAACTTAGACATGCAAAGCTCCACCAGCCATTCGTCAGAGTACTCACCGGAACACTCTCCGTCCGCTGCCGCCGCCGCCACAGCTGCTGCCACGGGAAAATGGGCCACCACCCTTCTTAAGGAGTGTGCTAGAGCTATCTCTGAAAAGGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTGGCTTCCCCTTATGGCGACTCTGATCAGAAAATGGCTTCCTACTTCTTGCAAGCTCTCTTCTGCAGAGCCACAGAAACTGGCCTTAGTTGCTACAAAACCCTCGTCGCTGTCGCCGAGAAGAATCACAACTTTGACTCTGCCCTGAGGCTCATCCTCAAGTTTCAAGAGGCAAGTCCATGGACAACATTTGGGCATGTGGCATCGAACGGTGCGATTCTCGAAGCGCTCGAGGGAGAAACAAAGCTCCACATCATCGACATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACACGCAATGATGACACCCCACATCTAAAGCTAACAGTGGTTACAACAACAAGCATATTGAAGTGTTTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTTGCAAGGCTAATGGGTGTCCCCTTTGAATTCAACCCTATAACAAATCTCAACCACTTAACTGACCTCACAAATGAAGCCCTCAAAGTAGAAGAAGGTGAAGCCATTGCCATAAATTGCATTGGAGCCTTAAGAAGAGTGAGAGTTGAAGAAAGAAACAATGTGATTTCAATGTTGAAATCACTAAAGCCTAGAGTTTTAACAATTGTAGAGGAAGAAGCTGATTTCATAAGCTCCAAAAATGACTTTTTGAAGTGCTTTGAAGAGTGTCTTAGATTTTACACTCTCTACTTTGAGATGTTAGAAGAGAGCTTTGTGGCAACAAGCAATGAGAGATTGGTTTTGGAAAGAGAATGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGTGATCAAGAAATTAGTGAAGAAGAAATGGGGAGTGAGAGAAGAGAAAAAGGAAAGCAATGGATAAAAAGGCTCAAACAAGCACGTTTTTCATCAGCTGATTTTAGTGAAGATGTAATGGATGATGTTAAGGCTTTGCTCAAGCGGTACAAACCCGGTTGGGCATTGTTGCGTCCGACCGCGGCCACTACCGGAGAAGAAGAAGAAGGTGGTGGTGGTGGTGATGATTCAGGTGGAATTTACTTGACATGGAAGGAAGAACCAGTGGTGTGGGTTTCAGCATGGAAACCCTAA 1368 44.88 MDITFFTAKEAPTSFFNQSHDHHLHHLHFSNLDMQSSTSHSSEYSPEHSPSAAAAATAAATGKWATTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSILKCLMKEIGQRMEKFARLMGVPFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLGCDQEISEEEMGSERREKGKQWIKRLKQARFSSADFSEDVMDDVKALLKRYKPGWALLRPTAATTGEEEEGGGGGDDSGGIYLTWKEEPVVWVSAWKP 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 927779 929546 - CcPI632755_06g001000.1 Cco06g0100 180700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0100 455 Pfam GRAS domain family 67 454 IPR005202 -
Cco06g0100 455 ProSiteProfiles GRAS family profile. 56 454 IPR005202 -
Cco06g0100 455 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 453 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cco06g0100 455 MobiDBLite consensus disorder prediction 419 439 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1500 Cco-Chr4:30425281 Cco06g0100 Cco-Chr6:927779 2.50E-42 dispersed
Cco04g1511 Cco-Chr4:30542929 Cco06g0100 Cco-Chr6:927779 1.60E-116 dispersed
Cco06g0100 Cco-Chr6:927779 Cco11g0745 Cco-Chr11:8265701 3.20E-34 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59432 PF03514 GRAS 1.10E-94 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0100 K27743 - csv:101206730 772.696