Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0128 ATGGAGTTGGATGGCATCGAAGGTATGCCATCCATGGATGTGATGGATGAGGAAGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGAATCAACAATAACGACAATCCCACCACCACAAGTGTCCACGAACTTCTTGAATGTCCCGTTTGCACCAATTCTATGTATCCCCCAATTCATCAGTGTCCCAATGGACATACACTCTGTTCTTCATGTAAAACAAGGGTAGACAACCGTTGCCCGACGTGCAGACAAGAGCTCGGTGATATCAGATGTCTCGCATTAGAAAAAATAGCTGAATCACTTAAACTGGCTTGTAAATTTTGCACATTTGGGTGCCAGGAGATCTTGCCTTACTACAGCAAACTCAAGCACGAATCTGCTTGTTACTATAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAATTGATGGGGATATTCCTTTCCTTGTTTCTCATCTTCGGGACGATCACAAGGTTGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTTGAAAACGCTACATGGATGCTAACAGTCTTCCACTGTTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCAGTTTACATGGCATTTCTCCGATTCATGGGGGACGAAACAGATGCCCGAAACTACAGTTACAGCCTCGAGGTCGGTGGAAATGGCAGGAAGCTGATATGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTCAGAGACAGCCACGACGGCCTCATTATACAACGAAACATGGCACTCTTCTTCTCGGGAGGGGAAAGGAAAGAGCTGAAGCTGCGGATCACGGGACGGATTTGGAAAGAACAAAATAAACAGTAA 915 45.9 MELDGIEGMPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCQEILPYYSKLKHESACYYRPYTCPYAGSDCPIDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1240824 1243548 + CcPI632755_06g001280.1 Cco06g0128 180728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0128 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 294 IPR008974 GO:0005515(InterPro)
Cco06g0128 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 296 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cco06g0128 304 CDD RING-HC_SIAHs 51 89 - -
Cco06g0128 304 Pfam Sina, TRAF-like domain 197 294 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cco06g0128 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 105 IPR013083 -
Cco06g0128 304 SUPERFAMILY TRAF domain-like 106 298 - -
Cco06g0128 304 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 53 88 IPR049548 -
Cco06g0128 304 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Cco06g0128 304 SUPERFAMILY RING/U-box 47 93 - -
Cco06g0128 304 Pfam Sina, zinc finger 102 177 - -
Cco06g0128 304 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270(InterPro)
Cco06g0128 304 FunFam E3 ubiquitin-protein ligase SINAT3 103 161 - -
Cco06g0128 304 CDD Sina 167 295 - -
Cco06g0128 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 160 IPR013083 -
Cco06g0128 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 162 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1060 Cco-Chr5:9461056 Cco06g0128 Cco-Chr6:1240824 4.00E-143 dispersed
Cco05g1249 Cco-Chr5:12055228 Cco06g0128 Cco-Chr6:1240824 1.70E-22 dispersed
Cco05g2942 Cco-Chr5:36885713 Cco06g0128 Cco-Chr6:1240824 3.90E-125 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0128 K04506 - csv:101209363 649.818