Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0128 | ATGGAGTTGGATGGCATCGAAGGTATGCCATCCATGGATGTGATGGATGAGGAAGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGAATCAACAATAACGACAATCCCACCACCACAAGTGTCCACGAACTTCTTGAATGTCCCGTTTGCACCAATTCTATGTATCCCCCAATTCATCAGTGTCCCAATGGACATACACTCTGTTCTTCATGTAAAACAAGGGTAGACAACCGTTGCCCGACGTGCAGACAAGAGCTCGGTGATATCAGATGTCTCGCATTAGAAAAAATAGCTGAATCACTTAAACTGGCTTGTAAATTTTGCACATTTGGGTGCCAGGAGATCTTGCCTTACTACAGCAAACTCAAGCACGAATCTGCTTGTTACTATAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAATTGATGGGGATATTCCTTTCCTTGTTTCTCATCTTCGGGACGATCACAAGGTTGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTTGAAAACGCTACATGGATGCTAACAGTCTTCCACTGTTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCAGTTTACATGGCATTTCTCCGATTCATGGGGGACGAAACAGATGCCCGAAACTACAGTTACAGCCTCGAGGTCGGTGGAAATGGCAGGAAGCTGATATGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTCAGAGACAGCCACGACGGCCTCATTATACAACGAAACATGGCACTCTTCTTCTCGGGAGGGGAAAGGAAAGAGCTGAAGCTGCGGATCACGGGACGGATTTGGAAAGAACAAAATAAACAGTAA | 915 | 45.9 | MELDGIEGMPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCQEILPYYSKLKHESACYYRPYTCPYAGSDCPIDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1240824 | 1243548 | + | CcPI632755_06g001280.1 | Cco06g0128 | 180728 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0128 | 304 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 161 | 294 | IPR008974 | GO:0005515(InterPro) | |
Cco06g0128 | 304 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 38 | 296 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Cco06g0128 | 304 | CDD | RING-HC_SIAHs | 51 | 89 | - | - | |
Cco06g0128 | 304 | Pfam | Sina, TRAF-like domain | 197 | 294 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Cco06g0128 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 105 | IPR013083 | - | |
Cco06g0128 | 304 | SUPERFAMILY | TRAF domain-like | 106 | 298 | - | - | |
Cco06g0128 | 304 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 53 | 88 | IPR049548 | - | |
Cco06g0128 | 304 | ProSiteProfiles | Zinc finger RING-type profile. | 53 | 89 | IPR001841 | - | |
Cco06g0128 | 304 | SUPERFAMILY | RING/U-box | 47 | 93 | - | - | |
Cco06g0128 | 304 | Pfam | Sina, zinc finger | 102 | 177 | - | - | |
Cco06g0128 | 304 | ProSiteProfiles | Zinc finger SIAH-type profile. | 106 | 166 | IPR013010 | GO:0008270(InterPro) | |
Cco06g0128 | 304 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 103 | 161 | - | - | |
Cco06g0128 | 304 | CDD | Sina | 167 | 295 | - | - | |
Cco06g0128 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 160 | IPR013083 | - | |
Cco06g0128 | 304 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 162 | 294 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g1060 | Cco-Chr5:9461056 | Cco06g0128 | Cco-Chr6:1240824 | 4.00E-143 | dispersed | |
Cco05g1249 | Cco-Chr5:12055228 | Cco06g0128 | Cco-Chr6:1240824 | 1.70E-22 | dispersed | |
Cco05g2942 | Cco-Chr5:36885713 | Cco06g0128 | Cco-Chr6:1240824 | 3.90E-125 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0128 | K04506 | - | csv:101209363 | 649.818 |