Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0146 ATGGCCGGCTTGGTCACTGGTTCCCAACACTATCCCCACAGTGCTGATGAGAATCTTCGTGGACCTCCACTATCGTTGAAAATATGTCGAGTTTGCAGTGACGAAATAGGACTAAAACAAGATGGGAAAGTATTTGTGGCATGTCTTGTGTGCAATTTCCCTGTTTGTCGACCTTGTTATGAGTATGAAAGGAGCGAAGGCAATAGGTGTTGTCCCCAATGCAACACTCGCTATAAGCGTCACAAAGGCTCACCCAGAGTGATCGGCGACGAGGAAGAAGGTGACGATGCCGATGATTTTGACGATGAGTTCCCCATGAAACACCACAACAATGACGAATTTCAAACAAAGCAGCCTAATCATTCGGAAAACGATAACTACAATGAGCAGAATTGGGATAAAAATGTTCAGAATTCGTTCTCAGTTGCTGGAAGTGTGAATGGGAAGGATATGGAAGGGGAAAAAGAGGGTTATGGAAGTGTAGAATGGAAGGAGAGAATTGATAAGTGGAAAGTGAGGCAAGAGAAGAGAGGTTTGGGAAACAAGGAAGATGGAAGTAACAATGATCAAGAAGAAGATGACTACTTATTGGCAGAAGCCCGGCAGCCGCTATGGCGGAAACTTCCAATATCGTCAAGCAAAATCAGTCCATATCGCATCGTCATTGTCCTCCGCCTCATAATTCTTGCATTCTTCTTCCGATTTCGGATCCTTACTCCGGCCTACGACGCCTTCCCCTTGTGGCTGATCTCCGTCATCTGCGAAATCTGGTTCGGCTTCTCCTGGATTCTCGATCAGTTCCCCAAATGGGCTCCCATCAACCGGGAGACCTACCTAGATCGCCTCTCCATGCGCTTCGAGCGCGACGGCGAGCCCAACCGCCTCTCACCGATCGATTTCTTCGTCAGCACGGTGGACCCTCTGAAAGAGCCGCCGATCATAACCGCCAACACCGTCCTTTCCATCCTCTCGGTCGACTATCCGGTGGAGAAGGTCAGCTGCTACGTATCGGACGATGGAGCGTCGATGCTGCTGTTCGATACGCTGGCGGAGACTGCGGAGTTTGCTCGGAGATGGGTGCCGTTTTGCAAGAAGTTCAGCATCGAACCTAGGGCTCCGGAGTTCTATTTCTCACAGAAGATGGATTACTTGAAGGATAAGGTGCTGGCTAGCTTTGTGAAGGAGAGGAGGGCAATGAAGAGGGAATACGAAGAGTTCAAGGTGAGGATCAACGCGTTGGTGGCGAAGGCTCAGAAGAAACCAGAAGAGGGATGGGTTATGCAAGATGGCACTCCATGGCCTGGAAACCTCACCCGTGATCATCCTGGCATGATACAGGTGTATCTGGGAAGTGAAGGTGCACTTGACGTGGAAGGTAAAGAGTTGCCTCGTCTTGTATATGTTTCTCGTGAGAAACGCCCTGGATATCAACACCACAAGAAAGCTGGTGCTATGAATGCTCTTGTTCGAGTCTCTGCAGTCCTCACAAATGCACCGTTCATCTTAAATCTGGATTGTGATCACTACGTCAACAATAGCAAAGCTGTAAGGGAAGCCATGTGCTTTCTAATGGACCCTCAGCTTGGAAAGAAACTATGCTATGTTCAGTTTCCTCAAAGATTTGATGGTATTGATCGTCACGACAGATATGCTAATCGGAATATCGTGTTCTTTGATATCAACATGCGAGGGCTAGATGGAATCCAAGGCCCAGTTTATGTTGGCACAGGATGTGTCTTCAACAGGCAGGCTTTATATGGATATGAACCACCAGTCTCTGAGAAAAGGCCAAAGATGACATGCGATTGTTGGCCTTCCTGGTGTTGCTGCTGCTGCGGTGGTTCAAGGAAATCAAAATCCAAGAGGAAAGGAGAAAGAGGTTTGCTTGGAGGCCTGTTCAAGAAGAAGAAAATGATGGGGAAGAGTTATGTAAGGAAAGCGCCGGGACCAGTTTTTGATCTTGAAGAGATTGAAGAAGGGTTCGAAGGTTATGATGAGTTGGAGAAGTCATCACTCATGTCGCAAAAGAATTTCGAGAAAAGATTCGGACAGTCACCAGTTTTCATCGCTTCTACCCTTAAGGAAGATGGAGGTCTTCCAGAAGGGACTAACAGCACTTCACTTGTTAAAGAAGCCATCCATGTGATTAGCTGTGGTTATGAAGAGAAAACAGAATGGGGAAAAGAGATAGGTTGGATTTACGGTTCTGTCACTGAGGATATTTTGACTGGATTCAAGATGCATTGTAGAGGATGGAAGTCAGTGTACTGCATGCCCCAGAGACCAGCTTTCAAGGGATCGGCTCCAATAAATCTTTCGGATCGTTTGCACCAAGTTCTGAGATGGGCTTTAGGTTCTGTTGAAATTTTCCTCAGCCGACACTGCCCGCTATGGTATGCTTATGGAGGAAAGCTAAAATGGCTTGAAAGGCTTGCCTACATCAACACTATTGTTTACCCTTTTACTTCCATTCCATTACTTGCTTACTGCACAATCCCAGCTGTCTGTCTTCTCACTGGAAAATTCATTATCCCCACCTTGACGAACTTGGCTAGCGTCTGGTTCATGGCGTTGTTTATTTCCATCATTGCAACGGCCGTGCTGGAGCTTCGATGGAGTGAAGTGAGTATTGAAGACTTATGGCGTAATGAGCAATTCTGGGTGATTGGTGGTGTCTCCGCACATCTTTTTGCAGTGTTCCAAGGCCTTCTCAAGGTCCTTGGCGGAGTAGACACCAACTTCACAGTTACAGCGAAAGCAGCTGAAGACACCGAGTTTGGAGAGCTCTATCTTTTCAAGTGGACGACACTCCTCATTCCGCCGACCACTCTCATAATCTTGAACATGGTGGGAGTGGTTGCTGGAGTTTCAGATGCAATCAACAATGGCTACGGTTCATGGGGTCCTCTGTTTGGAAAACTGTTTTTTGCTTTCTGGGTAATTGTTCATCTCTATCCTTTCCTCAAGGGTCTGATGGGAAGACAAAACAGGACCCCCACCATCGTCGTCCTTTGGTCCGTGCTTCTTGCTTCCATATTTTCACTGGTTTGGGTGCGAATTGATCCCTTCTTGCCCAAGCAAACAGGTCCTGTCCTCAAACAATGTGGAGTTGATTGCTAG 3120 47.18 MAGLVTGSQHYPHSADENLRGPPLSLKICRVCSDEIGLKQDGKVFVACLVCNFPVCRPCYEYERSEGNRCCPQCNTRYKRHKGSPRVIGDEEEGDDADDFDDEFPMKHHNNDEFQTKQPNHSENDNYNEQNWDKNVQNSFSVAGSVNGKDMEGEKEGYGSVEWKERIDKWKVRQEKRGLGNKEDGSNNDQEEDDYLLAEARQPLWRKLPISSSKISPYRIVIVLRLIILAFFFRFRILTPAYDAFPLWLISVICEIWFGFSWILDQFPKWAPINRETYLDRLSMRFERDGEPNRLSPIDFFVSTVDPLKEPPIITANTVLSILSVDYPVEKVSCYVSDDGASMLLFDTLAETAEFARRWVPFCKKFSIEPRAPEFYFSQKMDYLKDKVLASFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRQALYGYEPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKRKGERGLLGGLFKKKKMMGKSYVRKAPGPVFDLEEIEEGFEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPQRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIIATAVLELRWSEVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAAEDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFLPKQTGPVLKQCGVDC 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1492988 1500097 + CcPI632755_06g001460.1 Cco06g0146 180746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0146 1039 CDD mRING-HC-C4C4_CesA 27 77 - -
Cco06g0146 1039 Coils Coil 396 416 - -
Cco06g0146 1039 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 403 590 IPR029044 -
Cco06g0146 1039 SUPERFAMILY RING/U-box 24 100 - -
Cco06g0146 1039 FunFam Cellulose synthase 415 589 - -
Cco06g0146 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 102 IPR013083 -
Cco06g0146 1039 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 210 1008 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cco06g0146 1039 SUPERFAMILY Nucleotide-diphospho-sugar transferases 311 852 IPR029044 -
Cco06g0146 1039 MobiDBLite consensus disorder prediction 101 119 - -
Cco06g0146 1039 Pfam Zinc-binding RING-finger 25 95 IPR027934 -
Cco06g0146 1039 MobiDBLite consensus disorder prediction 82 133 - -
Cco06g0146 1039 Pfam Cellulose synthase 298 1032 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0696 Cco-Chr3:7150025 Cco06g0146 Cco-Chr6:1492988 0.00E+00 dispersed
Cco06g0146 Cco-Chr6:1492988 Cco11g1154 Cco-Chr11:22565194 0.00E+00 dispersed
Cco06g0146 Cco-Chr6:1492988 Cco10g1101 Cco-Chr10:23307788 5.10E-237 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0146 K10999 - csv:101205733 1960.27