Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0159 ATGGGGCGTTCCCTAGTTGCTGGCCTCTGTTTATGGTTCTCTCTGACATTGGTGATTGCAGATGCTAATGACTCTTCTTTCGGGGGTTTAGTCTGGTCTTCTGCAAAAGAAGAGGGCGATCTCCTTATTGAGCACAGGCCCCAGGAAGATTCCGCCGCCGCCACACCTGTCGTTCACGACGCCGATGGCTTTGATGGCGGCTTTTCTTCCCTCGATAGCATGTTACAGTGGGCTATAGGCCATTCTGATCCTGCAAAACTGAAGGATACTGCACAGGATGTGAAACGATTGTCTCCAAGTGAGATAAAGAAGCGTCAAGAAGAAATTAAGGACCTAATAGAGGAGTTGAAGGTGCCATCAGATGCAAAGCTGATGCAAATTGCGATAGATGACTTGAAAAATTCCTCTCTATCATTGGAAGATCGCCATCGGGCATTACAGGAGCTTTTAGTACTCGTTGAGCCAATAGACAATGCAAATGATTTGGACAAACTTGGGGGCCTTGCTGTGCTTATTCATGAGCTTAATCATGTCGATCCTGATATTAGGAAAGTTGCAGCGTGGATTCTTGGAAAAGCAAGTCAGAATAATCCTATTGTTCAAAAACAGGTATTGGAACTCGGGGCACTAGCAAAATTAGTAACGATGGTAAAATCTGATTTTGTAGAAGAAGCCATTAAGGCATTGTATGCTATTTCATCGTTGGTTCAAAATAATTTATCTGGCCAGGAATTATTCTATGCCGAAGCTGGAGAAACTATGCTTCAGGATATTTTAAGCAACTCGAGCATGGATATCAGATTGCAAAAGAAAGCTGTTTTTCTTGCAAGTGATTTGGCTGTGACACAACTAGAAAAAACAGATGAAGCTGAAAGGCCATTTTTTGGAGATCGCCTTTTCTTGAAGTCTGTGGTTGATCTCATTCATTCCACAGACATTGATCTCCAGGAGAAGGCCCTCATTGCTCTAAAGAACCTCCTGCTTTTGAGAATAACGAAAGCTCAAGTTTTAAGAGAATTTTGTGGGTTGGATGTTGCTTTAGAGAGGATGAGGGTGAAGCTGGAGGTATTAAAGGAAGGGGAAGATCACCGAGATTATGCAATGGATGTGGAAGATCTACGAAGCCAAGTGGAGTTACTTTTCCTTGAGAAGCTGGGAAAGAGAATGCAGCGGCCGGTAGCAGCTCTCTCTCACGAACATCCATCCCGGCGGCATCTTTCTCTCTCGAGCACCCATCCCGCCGTATTTTCATTTATTACGATGGCTGATGCTCATGAAACTGATAAGAACATTGAAATATGGAAAATTAAGAAGTTGATTAAAGCACTTGAAGCTGCAAGAGGTAATGGGACTAGCATGATCTCTCTCATCATGCCTCCACGTGATCAAATATCTCGTGTTACTAAGATGCTTGGTGATGAATTTGGAACTGCTTCGAACATTAAGAGCAGGGTAAATCGTCAATCTGTTTTGGGTGCTATCACGTCTGCTCAGCAGAGACTCAAGCTGTATAACAAGGTTCCTCCAAATGGGCTTGTGCTTTATACTGGGACAATCGTGACTGAAGATGGAAAAGAAAAGAAAGTCACAATTGATTTTGAGCCTTTCAGGCCTATAAATGCATCTCTTTATCTCTGTGACAACAAGTTCCACACGGAAGCCCTGAATGAACTGTTAGAATCTGATGACAAGTTTGGCTTCATTGTCATGGATGGTAATGGAACGCTCTTTGGCACATTGAGTGGTAACACACGTGAAGTCCTTCACAAATTTAGTGTCGACCTTCCTAAGAAACATGGAAGAGGAGGTCAGTCAGCACTTAGGTTTGCCCGTCTTCGGATGGAGAAGCGGCACAACTATGTGAGGAAAACAGCAGAGCTTGCAACCCAGTTCTTTATTAATCCTGCCACTAGTCAACCCAATGTTGCAGGATTGATACTGGCTGGATCAGCTGACTTCAAAACAGAGCTTAGTCAATCCGACATGTTTGATCCTCGTCTTCAGGCCAAAATACTTAATGTTGTCGATGTCTCTTATGGAGGGGAAAATGGATTCAATCAAGCTATTGAATTGTCATCCGAGATCTTGTCTAATGTAAAATTTATACAGGAGAAGCGCTTGATTGGAAAATACTTTGAAGAGATTAGCCAGGACACAGGGAAGTATGTTTTTGGTGTTGACGACACACTGAAAGCTCTGGAGATGGGTGCTGTTGAAATACTTATTGTTTGGGAAAATTTAGATATCAATAGGTATGTATTAAAGAATGCTGCCACTGGTGAGATTATTATAAAGCACTTGAACAAGGAACAGGAAGCCAATCAGAGTAACTTCCGTGACACCGCCACCTCTGCTGAGTTGGAGGTTCAAGAAAAGATGGCCTTGCTGGAATGGTTTGCAAACGAGTACAAGAAGTTTGGTTGCACCCTGGAGTTCGTTACCAACAAATCACAGGAAGGATCACAGTTCTGCAGAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGATCTTTTGATGAACTATCTGATGGGGAAGAGTACGGTGATTCTGAATAG 2571 42.94 MGRSLVAGLCLWFSLTLVIADANDSSFGGLVWSSAKEEGDLLIEHRPQEDSAAATPVVHDADGFDGGFSSLDSMLQWAIGHSDPAKLKDTAQDVKRLSPSEIKKRQEEIKDLIEELKVPSDAKLMQIAIDDLKNSSLSLEDRHRALQELLVLVEPIDNANDLDKLGGLAVLIHELNHVDPDIRKVAAWILGKASQNNPIVQKQVLELGALAKLVTMVKSDFVEEAIKALYAISSLVQNNLSGQELFYAEAGETMLQDILSNSSMDIRLQKKAVFLASDLAVTQLEKTDEAERPFFGDRLFLKSVVDLIHSTDIDLQEKALIALKNLLLLRITKAQVLREFCGLDVALERMRVKLEVLKEGEDHRDYAMDVEDLRSQVELLFLEKLGKRMQRPVAALSHEHPSRRHLSLSSTHPAVFSFITMADAHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINRYVLKNAATGEIIIKHLNKEQEANQSNFRDTATSAELEVQEKMALLEWFANEYKKFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDGEEYGDSE 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1655111 1662502 - CcPI632755_06g001590.1 Cco06g0159 180759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0159 856 Gene3D - 104 390 IPR011989 -
Cco06g0159 856 FunFam Peptide chain release factor subunit 1 699 856 - -
Cco06g0159 856 Gene3D - 699 856 IPR029064 -
Cco06g0159 856 Pfam eRF1 domain 3 701 838 IPR005142 -
Cco06g0159 856 SMART eRF1_1_2 424 560 IPR005140 -
Cco06g0159 856 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 422 847 IPR004403 GO:0002184(PANTHER)|GO:0003747(InterPro)|GO:0005829(PANTHER)|GO:0006415(InterPro)|GO:0016149(PANTHER)|GO:0018444(PANTHER)|GO:1990825(PANTHER)
Cco06g0159 856 FunFam Eukaryotic peptide chain release factor subunit 1 556 697 - -
Cco06g0159 856 NCBIfam peptide chain release factor aRF-1 432 837 IPR004403 GO:0003747(InterPro)|GO:0006415(InterPro)
Cco06g0159 856 Pfam eRF1 domain 1 437 559 IPR005140 -
Cco06g0159 856 SUPERFAMILY Translational machinery components 562 696 - -
Cco06g0159 856 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 426 560 IPR024049 -
Cco06g0159 856 SUPERFAMILY L30e-like 698 840 IPR029064 -
Cco06g0159 856 Gene3D eRF1 domain 2 556 697 IPR042226 -
Cco06g0159 856 FunFam Eukaryotic peptide chain release factor subunit 1 422 555 - -
Cco06g0159 856 Coils Coil 129 149 - -
Cco06g0159 856 Gene3D eRF1 domain 1 415 555 IPR024049 -
Cco06g0159 856 SUPERFAMILY ARM repeat 110 341 IPR016024 -
Cco06g0159 856 Pfam Nucleotide exchange factor Fes1 71 162 IPR013918 -
Cco06g0159 856 Pfam eRF1 domain 2 564 697 IPR005141 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0159 K03265 - csv:101218139 842.802