Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0168 ATGCCGTCTGAAGTATTGGACTTGAAGGGTTTGTCTTCATCTTCCTTCTTCTCCGACGATTTACGTCATTCAGATGAGGGGCAGGTTGGAGTTTGGAAGTCAGCTAGTGTGCCAAATCACCGTGCCAGTAACATATCAGGTGCTTCATCATCTGTGGAAAAATTTTCAATAGGTGAGTGCCTGACAGAGAACTCACTGGAAAATCATGATTCATTTCCTGTGAGAGACCAGAATGCAAGTCTTATCCTGAATAGGCATGCTGTTGGAGCTGAAAGAACATCCAATTATTTTTCTCGAAGTAATGAAGTCAATATGATGAATTCTCAGTATGAGAGTAGTCTCTTCTCGAGTTCCTTATCAGATATATTTACTAGGAAGTTGCGTTTTTCTCCGAGCAATGCACTATATGGGCATTCTGTTGATACTGTTGCATCTCACTTTGAGGAGGAGGAAGTTTTTGAGTCACTTGAAGAATTGGAGGCCCAAACCATTGGAAACCTCCTCCCTGACGATGATGACTTACTTGCTGGAGTAACTGATGGGCTTGATTGTTTGGTTGAAACAACTGGCGAGGATGATGCTGAGGACTTGGATTTTTTTAGCAATGTTGGAGGGATGGATTTGGGTGATGATGGGTTATCTGTTGGGCAGAAGAATTCTGAATCTCCTGGAGGACTTTTTAACAATTTGCCGGGGTTGCATAATGGTGCTATGGCTGGAGAGCATCCTTTAGGCGAACATCCTTCCAGGACACTGTTTGTGAGAAACATTAATAGCAATGTTGAAGATTCTGAATTGAAGGTCCTTTTTGAGCAATATGGAGACATTCGCACTCTTTATACAGCATGCAAACATCGAGGGTTTGTTATGATATCCTATTATGATATTAGAGCTGCCCGTAATGCAATGAAAGCACTCCAAAATAAACCGTTGAGAAGAAGGAAGCTCGACATACATTATTCTATACCAAAGGACAACCCTTCTGAAAAAGATATCAACCAAGGAACTCTGGTTGTTTTTAACCTTGAGTCTTCTGTTTCAAATGAAGAACTTCGTCAAATATTTGGTGTCTATGGAGAAATCAAGGAGATCCGTGAAGCCCCCCACAGAAGTCATCATAAATTCATTGAATTTTATGATATCCGAGCTGCAGAGGCTGCTCTTTGTGCATTAAACCTGAGTGATATAGCTGGCAAGCAGATAAAGCTTGAGCCAAGTCGTCCTGGTGGTGTGAGACGCAGTTTGGTACAACAATTACATCCACAGTTGGAGGGGGGAGATATTGGTCTCTATTTGCAACAGGGTAGCCCTCCCGTTAACTGTAGTGCCGGATTCTCTGGCTTAGTTCCTAGTGGGACTATCAAGTCTAGCAGCCTGAGTAATGGATCTGTTCTTGGAGTACACTCTATGTTACGAGCTCCATCTCTGGAGACTGTGTTGCACCATGGGATATCTTCTAGCGTTCCTAGTAGCTTACCTTCTGTAATGAGATCTGAATCAACTGGCAACCAATCTGGCTTCATTGACTCTGGTCATTCACCTTCACAACTGAAGCTGGGTATCCGGGCATCTCCAGCTGTTCATCCTCATTCACTTCCAGAACACCCTGATGGTTTGAACAACAATGTTCATTGCAATTCTCTAAATACGATTGCAGGAAACATCAGTCTACGACCGCCCGAAAGAGCTGATAGCAGGCAGCTATGTGGAGTGAACTTTAATGGTCGCTCAATTGAATTGAATGAAGATGTTTTTGCATCTGGTGGTAACAGAACATGCCCCATTCCTGGGCCTCATTATACATGGGGTAACTCCTACCGGCCCCAGCCTCCTGCTCCAGGTGTTGTATGGCCAAATTCTCCATCTTATATGAATGGAATTTCTGCTGCCCATACCCCGACCCAGGTCCATGGAGTTCCAAGAGCAGCATCTCATTTGATGCATACAGTTATGCCTATGAATAATCACCACGTTGGATCAGCACCAGCTGTTAATCCTTCTATTTGGGATAGACAACATGCTTATGCTGGGGAATTGTCAAAAGCCTCTGGTTTCCATTCAGGTTCTATAGGGAATATGAATTTATCTAACAATTCACCACAGTCTATGGACTTTTTCTCTCATATCTTCCCACAAGTTGGTGGAAATTCTGTAGAGCTTCCTATCCCCCAAAGGAATGTCGGGCTACAATCTCATCATCAGCGGTGCATGGTTTTTCCTGGACGGGGCCAAATTCTTCCAATGATGAATTCATTTGACTCTTCAAATGAACGTGGTAGAAGTCGAAGAAATGAACCAGCCTCTAATCAAGCAGATAAGAAGCAATATGAACTTGATATTGATCGCATAATGAGGGGTGAAGACAATCGTACTACACTTATGATAAAGAACATACCTAACAAATATACCTCAAAGATGCTTTTGGCTGCAATTGATGAACGCCATCGAGGAACTTATGACTTCATCTATCTGCCCATTGACTTTAAGAACAAATGTAATGTGGGATACGCGTTCATTAACATGACTGATCCTGGCCTAATCATTCCATTTTATGAGGCATTTAATGGGAAAAAATGGGAGAAATTCAATAGTGAGAAGGTGGCATCACTTGCATATGCCCGCATACAGGGAAAAGCTGCTCTCATCGCTCATTTCCAGAATTCAAGCTTAATGAATGAAGATAAGCGATGTCGACCAATCCTTTTCAACACTGATGGCCCCAATGCAGGTGATCAGGTTCCGTTTCCAATGGGGGTAAATGTTCGTACTAGGCCTGGAAAAACCCGAACCAATACCCAGGATGAAAATCCTGATGAAGGTCTGATAATTTCAGGAAATGGTGAGAATTATTCCAGTGGAGACGCATCTTCTTCATGTCTTGTAAAGGATTTGGAGCAGGCAGTACCATAA 2910 42.78 MPSEVLDLKGLSSSSFFSDDLRHSDEGQVGVWKSASVPNHRASNISGASSSVEKFSIGECLTENSLENHDSFPVRDQNASLILNRHAVGAERTSNYFSRSNEVNMMNSQYESSLFSSSLSDIFTRKLRFSPSNALYGHSVDTVASHFEEEEVFESLEELEAQTIGNLLPDDDDLLAGVTDGLDCLVETTGEDDAEDLDFFSNVGGMDLGDDGLSVGQKNSESPGGLFNNLPGLHNGAMAGEHPLGEHPSRTLFVRNINSNVEDSELKVLFEQYGDIRTLYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDINQGTLVVFNLESSVSNEELRQIFGVYGEIKEIREAPHRSHHKFIEFYDIRAAEAALCALNLSDIAGKQIKLEPSRPGGVRRSLVQQLHPQLEGGDIGLYLQQGSPPVNCSAGFSGLVPSGTIKSSSLSNGSVLGVHSMLRAPSLETVLHHGISSSVPSSLPSVMRSESTGNQSGFIDSGHSPSQLKLGIRASPAVHPHSLPEHPDGLNNNVHCNSLNTIAGNISLRPPERADSRQLCGVNFNGRSIELNEDVFASGGNRTCPIPGPHYTWGNSYRPQPPAPGVVWPNSPSYMNGISAAHTPTQVHGVPRAASHLMHTVMPMNNHHVGSAPAVNPSIWDRQHAYAGELSKASGFHSGSIGNMNLSNNSPQSMDFFSHIFPQVGGNSVELPIPQRNVGLQSHHQRCMVFPGRGQILPMMNSFDSSNERGRSRRNEPASNQADKKQYELDIDRIMRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHRGTYDFIYLPIDFKNKCNVGYAFINMTDPGLIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPMGVNVRTRPGKTRTNTQDENPDEGLIISGNGENYSSGDASSSCLVKDLEQAVP 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1719877 1727197 - CcPI632755_06g001680.1 Cco06g0168 180768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0168 969 FunFam MEI2-like protein 5 isoform 2 239 333 - -
Cco06g0168 969 MobiDBLite consensus disorder prediction 488 513 - -
Cco06g0168 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 335 408 IPR000504 GO:0003723(InterPro)
Cco06g0168 969 CDD RRM1_MEI2_like 249 325 IPR034453 -
Cco06g0168 969 PANTHER RNA RECOGNITION MOTIF-CONTAINING 112 935 - GO:0045836(PANTHER)
Cco06g0168 969 Pfam RNA recognition motif 2 790 886 IPR007201 -
Cco06g0168 969 CDD RRM3_MEI2_like 793 878 IPR034454 -
Cco06g0168 969 SMART rrm1_1 792 868 IPR000504 GO:0003723(InterPro)
Cco06g0168 969 SMART rrm1_1 336 404 IPR000504 GO:0003723(InterPro)
Cco06g0168 969 SMART rrm1_1 251 319 IPR000504 GO:0003723(InterPro)
Cco06g0168 969 SUPERFAMILY RNA-binding domain, RBD 792 877 IPR035979 GO:0003676(InterPro)
Cco06g0168 969 MobiDBLite consensus disorder prediction 488 512 - -
Cco06g0168 969 MobiDBLite consensus disorder prediction 749 775 - -
Cco06g0168 969 CDD RRM2_MEI2_like 334 404 - -
Cco06g0168 969 MobiDBLite consensus disorder prediction 935 957 - -
Cco06g0168 969 MobiDBLite consensus disorder prediction 920 957 - -
Cco06g0168 969 FunFam Protein MEI2-like 1 334 428 - -
Cco06g0168 969 SUPERFAMILY RNA-binding domain, RBD 247 410 IPR035979 GO:0003676(InterPro)
Cco06g0168 969 MobiDBLite consensus disorder prediction 756 775 - -
Cco06g0168 969 Pfam RNA recognition motif 337 402 IPR000504 GO:0003723(InterPro)
Cco06g0168 969 Pfam RNA recognition motif 252 316 IPR000504 GO:0003723(InterPro)
Cco06g0168 969 Gene3D - 240 333 IPR012677 -
Cco06g0168 969 Gene3D - 334 422 IPR012677 -
Cco06g0168 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 323 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0168 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0168 Cco-Chr6:1719877 Cco09g2441 Cco-Chr9:38604298 1.60E-171 dispersed
Cco06g0168 Cco-Chr6:1719877 Cco05g2873 Cco-Chr5:36342965 7.40E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1348 Blo01g00156 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00157 Cam06g0059 Cec06g0173 Cco06g0168 Clacu06g0167 Cmu06g0163 Cre06g0939 Cone14ag0649 Cone15ag0659 . . . . Chy11g01832 Cme11g02368 . . . . . . . . Sed09g0339 . . . . . . Cpe17g00944 . Bhi12g02387 Tan06g1439 Cmetu11g1451 . Hepe03g1175 . . . . . . . . . Lsi09g01769 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003734 3 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 46