Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0176 ATGAAATCTCCCGATATGGCGGCGGTTACTGATTCTCTTGAGCAGTCTTTCCGTAACTTCACCCTCAACCACCGTCTAGCCTCGGCTGCCCCTTCCTCCGCCGGAGTTCGGAGGTCTCCGTCGTCGTTTTCTTCTTCTTCTTCTTCTTCCGACGACGATGACGAATCTCATCTTCCTCTTCAACATAATCGCTTCGACACAATCTTGGAGCTCAACTCTCACATCTCCCTCCCTCCTTTCTGGGAACAATGCCTCGATTTGAAGACAGGGGAAGTCTACTACAGAAACTGCCGGACTGGAATGAGAGTAAAGGAAGATCCAAGGACAGTGGAAGCACACAGCCGAGATTTATACTCAGAAGACGAAGACGACGACGATGATGAGACCTCGTCGGATGGTGGAAGTGAGGAGTCGTGTTCTTCATCGTCGTACGGTGGTAGTAGACAGCAATACCCGGCGGAAAACGTGGAGGATGTGCTGGTGGTGGCCGGATGCAAGAGATGCTTCATGTATTTCATGGTGCCGAAACAGGTTGAAGATTGCCCCAAATGCAGCAGCAGTCGTCTTGTTCATTTCGATCGCTCCGACGACAATAATGGCTTTCCATGA 609 50.74 MKSPDMAAVTDSLEQSFRNFTLNHRLASAAPSSAGVRRSPSSFSSSSSSSDDDDESHLPLQHNRFDTILELNSHISLPPFWEQCLDLKTGEVYYRNCRTGMRVKEDPRTVEAHSRDLYSEDEDDDDDETSSDGGSEESCSSSSYGGSRQQYPAENVEDVLVVAGCKRCFMYFMVPKQVEDCPKCSSSRLVHFDRSDDNNGFP 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1829275 1830477 - CcPI632755_06g001760.1 Cco06g0176 180776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0176 202 SUPERFAMILY WW domain 73 109 IPR036020 GO:0005515(InterPro)
Cco06g0176 202 MobiDBLite consensus disorder prediction 118 133 - -
Cco06g0176 202 Gene3D - 76 113 - -
Cco06g0176 202 MobiDBLite consensus disorder prediction 134 150 - -
Cco06g0176 202 MobiDBLite consensus disorder prediction 28 59 - -
Cco06g0176 202 MobiDBLite consensus disorder prediction 28 49 - -
Cco06g0176 202 MobiDBLite consensus disorder prediction 106 150 - -
Cco06g0176 202 PANTHER BOMB/KIRA PROTEINS 32 132 IPR051105 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0176 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0176 Cco-Chr6:1829275 Cco07g1257 Cco-Chr7:26486607 1.40E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1329 Blo01g00160 . . Bda11g00377 Bpe13g00824 . . . . . . . . . . . . . . . . . . . Cla06g00164 Cam06g0049 Cec06g0183 Cco06g0176 Clacu06g0177 Cmu06g0172 Cre06g0946 . . . . . . Chy11g01824 Cme11g02359 . Blo12g00291 . Bda11g00377 . . . Bma06g01333 Sed07g0129 . . . . . . Cpe17g00937 . Bhi12g02398 Tan06g1452 Cmetu11g1288 . . . . . . . . . . . Lsi09g01761 . Chy07g01527 Cme07g01971
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001835 4 2 2 3 3 2 4 2 2 2 2 2 2 2 2 3 2 2 4 2 2 2 2 2 2 2 2 2 2 1 68