Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0180 ATGAAGACTTCTTTGAGGAAGTTGAGGGGTTTTGGACTGCATAAGCACGAACCTAAGGACCGTGTAGATCTTCGTCCTTTGGCTCAATTGGATGAGCTTGCTCAGGCTTCTCGGGACATGGATGAAATGAGAGACTGTTATGATAGCTTACTTTCTGCAGCTGCCGCTACAGAAAATAGTGCTTACGAATTCTCAGTCTCGTTACAAGAAATGGGTGCATGCCTTCTTGAGAAAACTGCCCTGAATGATGATGAAGATAGTGGTAAGGTTCTGCTAATGCTGGGAAAGGTGCAATTCGAGCTCCAGAAACTTGTTGATCGATATCGCTCTCATATTTCACAAACCATAACACGCCCATCTGAATCTCTTCTGAACCAACTTCGAACAGTTGAGGAGATGAAAAGGCAATGTGATGAGAAAAGAGAAGTATATGAATACATGAGACAGAGGCACAAGGAGAAGGGGAGGTCAAAAACTGTCAAGGGAGAGAGCTTTACATTGCAACAGTTGCAAACAGCCCGAGAAGAATATGATGATGAGGCAACATTGTTTGTTTTCCGGTTGAAATCTTTGAAGCAAGGACAGTGTCATAGTCTTCTCACACAGGCTGCACGTCATCATGCTGCTCAGCTGTGTTTCTTCAAGAAGGCACTTCAATCTCTTGAAGCAGTGGAACCACATGTAAAATCGCTGACAGAGCAGCAGCACATAGATTACCGGTTCAGTGGACTGGAAGATGACAACATGGATGATGGACATCAAGATAGTGTCGATGACGACGACGACGACTATGATGAGGGTGATGATGGGGAATTAAGTTTTGATTATGCGCAAAATGATCATGATCAAGCTATTTCAACCTTACAGAAATCTGAGTTGGACCAGCCAGATCTTGCATTTCATCATGTGGAAGCTCTGAAGGAAAATCTGGACAGAAATCGTAGGAATTCTTTTTCCTTTGGTGGTAGAACAGTAAGCCAGTCTGCTCCACTTTTTCCTGATAAAAAATTTGATGCTGCTGAAAGAATAAGACAGATGCGTCCTTCATCAACTCGGAAGTTCCATACATATGTTCTACCCACCCCAGCTGATACAAAGGGTTTAATTTCTGGGGTTCCTGGAAATTCCGTGCCTAACACCATGCAGGCAATACGTCAGCAAAATTTATTGCGGCACTCGTCACCATTGGAACCAAGGAAGTACGACAAGTTAGTGGGAGATGAGAATATGTCGGGACATGGTGCTGCAAAGGCGCAGTCTGTACTCAAGGAGAGTAACACTAACACATCAGCCACTGAGTTACCTCCTCCTCTGTCTGATGCTTTGCCACGGCACAGTTTAGCTGCTGCTTCTGATGCTAAAAAAATTAAGAGACTAGCCTTTTCGGGCCCTTTAATAGGTAAGCCATCAACTAACAAGCCCGTTCCAGTTGAAAACCCTCAGTTGTTTTCGGGACCTCTCTTACGAAATCCAATACCACAACCTTTGTCATCATCACCAAAAGTGTCCCCAGCTGCTTCCCCTACTTTTATTTCCTCACCTAAAATAAATGAGCTACATGAGCTTCCTAGGCCTCCTATTAGTTCAACGTATAAGTCGTCAAGACCTTCAGGTTTAATTGGTCACTCAGCTCCTTTGGTATCAAAAAGTCAAGGACAATCTGCTGCAACGAAAACTGTTGTAAGGAGTACGGCGTCTCCATTGCCAATGCCTCCTCTCCAAACCATCACACGCAGTTTCTCCATTCCGTCCAGGAGTCCTAGGGAGACAGAGACCTTATTTCATGAGCCAAAACCTTTGGAAACCGTTGGATCTGCTGAAATGGTATTAGACACATCTTCACCTCCCTTGTCACCACTTACCTTATCTAACAACCAGAGTCATACATCAACAGGTTCAGAGAATGGTCCTGCAGTTAAAGTTGAGATGGATATTGACATAATGAGGGTGGGAACGAGACCCATTGGAACCACTGTAGAGAAAAAGAAAGAGACCAGAGCAAATTTAGTAATCAATGCAGGGTTTGAGGTTGAGAAGATTTTCATTGAGGTGGTCATGGGCAATGTGCAGATTGAGGAAACATTATGTGGAGATTATATTCTGTCGATCGCAGAAAAACCGGTCGGGGCCAAAGAATTTGTGCAAGCTTATGTTTTGAATATTGTTCAACATCTGCCTGGATGA 2184 43.82 MKTSLRKLRGFGLHKHEPKDRVDLRPLAQLDELAQASRDMDEMRDCYDSLLSAAAATENSAYEFSVSLQEMGACLLEKTALNDDEDSGKVLLMLGKVQFELQKLVDRYRSHISQTITRPSESLLNQLRTVEEMKRQCDEKREVYEYMRQRHKEKGRSKTVKGESFTLQQLQTAREEYDDEATLFVFRLKSLKQGQCHSLLTQAARHHAAQLCFFKKALQSLEAVEPHVKSLTEQQHIDYRFSGLEDDNMDDGHQDSVDDDDDDYDEGDDGELSFDYAQNDHDQAISTLQKSELDQPDLAFHHVEALKENLDRNRRNSFSFGGRTVSQSAPLFPDKKFDAAERIRQMRPSSTRKFHTYVLPTPADTKGLISGVPGNSVPNTMQAIRQQNLLRHSSPLEPRKYDKLVGDENMSGHGAAKAQSVLKESNTNTSATELPPPLSDALPRHSLAAASDAKKIKRLAFSGPLIGKPSTNKPVPVENPQLFSGPLLRNPIPQPLSSSPKVSPAASPTFISSPKINELHELPRPPISSTYKSSRPSGLIGHSAPLVSKSQGQSAATKTVVRSTASPLPMPPLQTITRSFSIPSRSPRETETLFHEPKPLETVGSAEMVLDTSSPPLSPLTLSNNQSHTSTGSENGPAVKVEMDIDIMRVGTRPIGTTVEKKKETRANLVINAGFEVEKIFIEVVMGNVQIEETLCGDYILSIAEKPVGAKEFVQAYVLNIVQHLPG 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1860134 1867881 - CcPI632755_06g001800.1 Cco06g0180 180780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0180 727 MobiDBLite consensus disorder prediction 613 636 - -
Cco06g0180 727 CDD BAR 39 227 - -
Cco06g0180 727 Coils Coil 130 150 - -
Cco06g0180 727 MobiDBLite consensus disorder prediction 463 538 - -
Cco06g0180 727 MobiDBLite consensus disorder prediction 243 273 - -
Cco06g0180 727 SUPERFAMILY BAR/IMD domain-like 31 232 IPR027267 -
Cco06g0180 727 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 630 IPR037488 -
Cco06g0180 727 MobiDBLite consensus disorder prediction 408 442 - -
Cco06g0180 727 Pfam BAR domain of APPL family 32 234 IPR004148 GO:0005515(InterPro)|GO:0005737(InterPro)
Cco06g0180 727 MobiDBLite consensus disorder prediction 613 637 - -
Cco06g0180 727 Gene3D Arfaptin homology (AH) domain/BAR domain 29 255 IPR027267 -
Cco06g0180 727 MobiDBLite consensus disorder prediction 491 514 - -
Cco06g0180 727 MobiDBLite consensus disorder prediction 251 273 - -
Cco06g0180 727 MobiDBLite consensus disorder prediction 420 435 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0180 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1323 Blo01g00161 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00167 Cam06g0045 Cec06g0187 Cco06g0180 Clacu06g0182 Cmu06g0177 Cre06g0950 . . . . . . Chy11g01821 Cme11g02355 . . . . . . . . . . . . . . . Cpe17g00934 . Bhi12g02403 Tan06g1458 . . . . . . . . . . . . Lsi09g01757 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003357 3 3 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 49