Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0181 ATGTTACCTACTCCACTGGATTTATACACCCAAACTCTCCGTGGCCTTGCCTCACAGTGGTGGTGGCCTGCCGTCTTCAAACCCCTCCATTTCCCCCAAATCTCCCGTCTGATCGGATCCAACCCTTTCCAGCGATCTAACTCCATAAACACCGGTTTTGAAGTTCTGCTAAGTGCTAAGTTTGTTGTTTTCGTGAATGCATCTGGTGTATTAGATATTGTTGTTGTTGTTGTTGGTATTGATGCTGATGTTGTTTGTTTTTTGTTTTCATCTTCTCTTGCTGAAGTTGGAAGTGAAACTGGTTGGAAATTGCGTGTTGGTGAATTGATTGATAGCAATCTTTCGCTCGAGAAAAAGATGTGGGGAATCGTTCGGCAAAAAGTTGGCGCTGGAGCCTCCTCTATTCCGGCTTTGCAGAGGATTCGTCCAGCCGCCTCATCATCGAGATACTATTCATCTGCCGCAAAAGAGATGACTGTGAGAGATGCTCTAAACTCTGCACTTGATGAAGAAATGTCCGCTGATCCTAAAGTTTTTTTGATGGGTGAAGAGGTTGGAGAATATCAGGGTGCCTATAAGATAACCAAAGGGCTTTTGGAGAAATATGGTCCCGAGAGGGTTCTTGATACCCCAATCACAGAGGCTGGGTTTGCTGGTATTGGTGTTGGCGCTGCTTACCATGGTCTGAAGCCGGTTGTGGAGTTTATGACATTTAATTTCTCCATGCAGGCCATTGATCATATCATTAATTCTGCGGCAAAAACGAATTATATGTCAGCTGGCCAAATTTCCGTGCCAATTGTCTTTAGAGGGCCTAATGGGGCAGCTGCTGGAGTTGGTGCCCAGCACTCCCAGTGTTATGCAGCATGGTATGGGTCCTGCCCTGGCTTGAAGGTTTTGGCCCCATATTCATCTGAAGATGCACGTGGGCTTTTAAAAGCTGCTATAAGGGATCCAGATCCTGTGGTGTTTCTTGAAAATGAGTTATTATATGGTGAATCGTTCCCTGTTTCAGCAGAGGTCCTTGATTCCAGTTTCACCGCTCCCATAGGAAAAGCTAAGATTGAGAGAGAAGGGAAGGATGTGACTATTACTGCTTTTTCGAAGATGGTGGGCTATGCACTTAAGGCAGCTGAATTACTTTCCAAAGAAGGAATTAGTGCTGAGGTTATTAACCTGCGTTCTATTCGGCCACTAGACAGAGCCACGATCAACGCTTCAGTTAGGAAGACCAATAGATTAGTAACAGTTGAAGAAGGGTTTCCTCAGCATGGGGTTGGAGCTGAGATCTGCACATCTGTCGTTGAGGAAAGTTTTGGCTATCTTGACGCGCCAGTGGAGAGGATTGCAGGGGCTGACATTCCCATGCCTTATGCAGCCAATCTTGAAAGGATGGCTGTCCCTCAGGTTGAGGACATCGTTCGAGCAGCAAAAAGAGCATGCTACAGAGCCGTACCATTGGCCGCAACTGTTTCAAATGATACTATTTTAACAGCTGAGGTTTCATCTTGCTTGGATTAG 1521 45.83 MLPTPLDLYTQTLRGLASQWWWPAVFKPLHFPQISRLIGSNPFQRSNSINTGFEVLLSAKFVVFVNASGVLDIVVVVVGIDADVVCFLFSSSLAEVGSETGWKLRVGELIDSNLSLEKKMWGIVRQKVGAGASSIPALQRIRPAASSSRYYSSAAKEMTVRDALNSALDEEMSADPKVFLMGEEVGEYQGAYKITKGLLEKYGPERVLDTPITEAGFAGIGVGAAYHGLKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFTAPIGKAKIEREGKDVTITAFSKMVGYALKAAELLSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTVEEGFPQHGVGAEICTSVVEESFGYLDAPVERIAGADIPMPYAANLERMAVPQVEDIVRAAKRACYRAVPLAATVSNDTILTAEVSSCLD 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1877859 1883849 - CcPI632755_06g001810.1 Cco06g0181 180781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0181 506 PANTHER DEHYDROGENASE RELATED 139 483 IPR027110 GO:0004739(PANTHER)|GO:0004739(InterPro)|GO:0005967(PANTHER)|GO:0006086(PANTHER)|GO:0006086(InterPro)
Cco06g0181 506 FunFam Pyruvate dehydrogenase E1 component subunit beta 157 349 - -
Cco06g0181 506 Pfam Transketolase, C-terminal domain 351 473 IPR033248 -
Cco06g0181 506 CDD TPP_PYR_E1-PDHc-beta_like 162 328 - -
Cco06g0181 506 Gene3D - 350 482 IPR009014 GO:0003824(InterPro)
Cco06g0181 506 SMART Transket_pyr_3 158 333 IPR005475 -
Cco06g0181 506 Pfam Transketolase, pyrimidine binding domain 157 331 IPR005475 -
Cco06g0181 506 Gene3D - 157 349 - -
Cco06g0181 506 FunFam Pyruvate dehydrogenase E1 beta subunit 350 482 - -
Cco06g0181 506 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 156 337 IPR029061 -
Cco06g0181 506 SUPERFAMILY TK C-terminal domain-like 346 480 IPR009014 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0181 K00162 - - csv:101220981 714.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0771 Cco-Chr3:8102428 Cco06g0181 Cco-Chr6:1877859 1.50E-72 dispersed
Cco03g1520 Cco-Chr3:29789022 Cco06g0181 Cco-Chr6:1877859 1.60E-57 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1321 Blo01g00162 . . Bda11g00379 . . . . . . . . . . . . . . . . . . . . Cla06g00168 Cam06g0044 Cec06g0188 Cco06g0181 Clacu06g0183 Cmu06g0178 Cre06g0951 . . . . . . Chy11g01820 Cme11g02354 . Blo12g00290 . Bda11g00379 . . . . Sed07g0124 . . . . . . Cpe17g00933 . Bhi12g02405 Tan06g1460 . . . . . . . . . . . . Lsi09g01756 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003819 3 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 2 45