Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0185 ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAATTGAATCCTGAAAGGGAAAGCGATGATGGTAAGCAAGACCATCCAATGGTTCCACCGAACATTGCCAAATTGCCTTCTGGAATAGACAAGCTTAGATCGAAAAGTAATGGAGGTTCCAAAAGGGAACAGCAGATTCCGAAGGATACACCTCTTGTCAACATTTCTGCTCAAACTTTCACTTTCCGGGAGCTTGCAATTGCGACGAAGAATTTTAGACCAGAGTGTTTTATTGGGGAAGGAGGATTTGGGCGTGTATACAAAGGGCGGCTCGAAAGCACAGGCCAGATTGTTGCAGTTAAACAGTTGGATAGGAATGGTCTTCAAGGCAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGCCTTCTACATCATCCAAATCTGGTGAATCTGATTGGTTACTGTGCTGATGGAGATCAACGGCTTCTTGTGTATGAGTTCATGCCTTTGGGATCATTGGAAGATCATCTTCACGAAATTCCACCTGATAAGGAACCCCTAGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCAGAGGGTTAGAGTACTTGCATGACAAGGCCAACCCTCCAGTTATTTATAGAGACTTCAAATCCTCCAATATATTACTTGATGAGGGATACCATCCAAAGCTTTCTGATTTTGGCCTTGCAAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACCAGGGTCATGGGAACTTATGGTTACTGTGCTCCCGAATACGCCATGACTGGACAATTGACCGTCAAGTCTGATGTTTATAGTTTTGGTGTTGTCTTCTTAGAGTTGATTACTGGACGGAGAGCCATCGATAGCACCCGACCCCAAGGGGAACAGAACCTTGTCACATGGGCACGGCCGTTCTTTAATGATCGCAGAAGATTCTCGAAATTGGCTGATCCACAGTTGCAGGGGCGATATCCCATGCGAGGGCTCTACCAGGCTTTAGCTGTGGCATCCATGTGTACCCAAGAACAGGCTGCAGCCCGTCCGCTCATTGGAGATGTGGTTACCGCCCTGTCTTATTTAGCAAATCAATCCTATGATCCAAGTTCTCCTTCAGGTACTGCTGCTGCTGCTCAGAGAGGTTCTGGTGACCGGGATGAAAGACGGAACAGAGAGGAGAAAGGTGGAGGTGTGGTAAAGAATGAAGAAGGGGGAGCATCTGGACGAAGGTGGCCATTGGATGGTCCCGAGAAGGACGACTCCCCAAGGGAGACTGCTAGGATTTTGAATAGGGATTTAGACAGAGAGCGTGCAGTTGCTGAGGCCAAGATGTGGGGAGAGAATTGGCGAGAAAAAAGACGACAGAGCACACAAGGCAGTTTTGATGGCTCTAATGGATGA 1404 47.08 MGCFPCFDSREEEKLNPERESDDGKQDHPMVPPNIAKLPSGIDKLRSKSNGGSKREQQIPKDTPLVNISAQTFTFRELAIATKNFRPECFIGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSYDPSSPSGTAAAAQRGSGDRDERRNREEKGGGVVKNEEGGASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMWGENWREKRRQSTQGSFDGSNG 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1946878 1951912 - CcPI632755_06g001850.1 Cco06g0185 180785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0185 467 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0185 467 SUPERFAMILY Protein kinase-like (PK-like) 65 359 IPR011009 -
Cco06g0185 467 MobiDBLite consensus disorder prediction 366 467 - -
Cco06g0185 467 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524(InterPro)
Cco06g0185 467 Pfam Protein kinase domain 90 293 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0185 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0185 467 Gene3D Phosphorylase Kinase; domain 1 47 161 - -
Cco06g0185 467 Gene3D Transferase(Phosphotransferase) domain 1 162 375 - -
Cco06g0185 467 MobiDBLite consensus disorder prediction 7 27 - -
Cco06g0185 467 MobiDBLite consensus disorder prediction 413 458 - -
Cco06g0185 467 FunFam Serine/threonine-protein kinase PBS1 58 161 - -
Cco06g0185 467 CDD STKc_IRAK 91 359 - -
Cco06g0185 467 MobiDBLite consensus disorder prediction 1 63 - -
Cco06g0185 467 FunFam Serine/threonine-protein kinase PBS1 162 377 - -
Cco06g0185 467 MobiDBLite consensus disorder prediction 382 400 - -
Cco06g0185 467 PANTHER OS07G0668900 PROTEIN 45 379 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0185 Cco-Chr6:1946878 Cco10g2058 Cco-Chr10:33962794 9.30E-146 dispersed
Cco06g0185 Cco-Chr6:1946878 Cco05g0690 Cco-Chr5:5660093 4.30E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86895 PF00069 Pkinase 1.90E-45 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0185 K13430 - csv:101219880 917.146