Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0198 ATGAAGAAATGTTGCCAAAATATGGAAGGAGTTATAAGTGCAGAACTTGACAAGGAAGTCCCTGAATTAATAACAGTAAAGGGAGTTTTTGAAGTGAAAAAGCTTGTGGCCCACATCAGAAGGGGAGTCAATAAAATTGTCACCGTTATCAAAGAAGAAAGCGCCACCGCGGGCGGAGGGGAAGAAGAAAGAGAGACCCCCGGAGAAGAGACTAGCGGCGGGGCTGCCACTGCCGGAGGAACTGATCACGAGAAAGAAGAAGGAGAAGGAGAGGGCACCGGAGAAGGGAGTAGCACTGCCGGAGGCACTGATCACGAGAAAGAAGAAGGAGAAAGAGAAGGAGGAGAAGGAGAGATAAAAGGTCAGAATCAAAATGGAAACAAAAAACAAGAAGAGAAGGGAGAGGGAAAGAAGGAAGAGCAGAGAAAGATAACAGAAGTTGTGCTTAAAGTTTATATGCATTGTGAAGCCTGCAAACACAAACTCTCAAAATGCTTGAATTCTTCTCACCATGGTGTGGAGGAAGTGACAGCTGATATGGGGAATCAAAAAGTGGTAATAAAAGGAAAAGACCTAAATCCCAAGAAAATATTGGAAGGAATTAGAAAAAAATACTCCAAAAATGTGGAGCTTATTTCTCCTAAAGAGCTGCCTGATAGTCCAAAGCAAAAGAAACCTGAACCTAAAAAGGAAGAGGCTCAGATGAAGACTGTGGAGCTAAAAATGAATATGCATTGTGAAGGCTGTGCAAGAGACATCAGGCAAACCATTGGAAAAATGGAAGGAGTAATGACAGTAGAAACAAATAAAGAGAGTTCAAAAGTGATAGTGAAGGGAATAATGGATCCTCCAAAGCTGGTGGAATGCATTAAGAAGAAAATGGGAAAGAATGTAGAGATGTTCAATAAGAAACAAGAGAAACAAAGCCAACCTAATAAAGATGCAAATCAAGACAAACCAGCCAACAAGAAAGATGCAAATCAAGACAATGAAAATTTTGTATTTAAATATCCTCCTCAATACTCTTTGCTTCACATTTACCCTAATCAAACTTTTAGTGATGATAATGTATTTTCTTGTTCTATTATGTAA 1092 39.84 MKKCCQNMEGVISAELDKEVPELITVKGVFEVKKLVAHIRRGVNKIVTVIKEESATAGGGEEERETPGEETSGGAATAGGTDHEKEEGEGEGTGEGSSTAGGTDHEKEEGEREGGEGEIKGQNQNGNKKQEEKGEGKKEEQRKITEVVLKVYMHCEACKHKLSKCLNSSHHGVEEVTADMGNQKVVIKGKDLNPKKILEGIRKKYSKNVELISPKELPDSPKQKKPEPKKEEAQMKTVELKMNMHCEGCARDIRQTIGKMEGVMTVETNKESSKVIVKGIMDPPKLVECIKKKMGKNVEMFNKKQEKQSQPNKDANQDKPANKKDANQDNENFVFKYPPQYSLLHIYPNQTFSDDNVFSCSIM 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2080391 2088350 - CcPI632755_06g001980.1 Cco06g0198 180798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0198 363 CDD HMA 153 203 IPR006121 GO:0046872(InterPro)
Cco06g0198 363 MobiDBLite consensus disorder prediction 54 141 - -
Cco06g0198 363 ProSiteProfiles Heavy-metal-associated domain profile. 235 299 IPR006121 GO:0046872(InterPro)
Cco06g0198 363 MobiDBLite consensus disorder prediction 212 233 - -
Cco06g0198 363 Pfam Heavy-metal-associated domain 151 203 IPR006121 GO:0046872(InterPro)
Cco06g0198 363 Pfam Heavy-metal-associated domain 243 294 IPR006121 GO:0046872(InterPro)
Cco06g0198 363 SUPERFAMILY HMA, heavy metal-associated domain 234 299 IPR036163 GO:0046872(InterPro)
Cco06g0198 363 MobiDBLite consensus disorder prediction 302 331 - -
Cco06g0198 363 SUPERFAMILY HMA, heavy metal-associated domain 146 203 IPR036163 GO:0046872(InterPro)
Cco06g0198 363 MobiDBLite consensus disorder prediction 217 233 - -
Cco06g0198 363 Gene3D - 232 302 - -
Cco06g0198 363 MobiDBLite consensus disorder prediction 125 141 - -
Cco06g0198 363 MobiDBLite consensus disorder prediction 302 330 - -
Cco06g0198 363 CDD HMA 244 299 IPR006121 GO:0046872(InterPro)
Cco06g0198 363 ProSiteProfiles Heavy-metal-associated domain profile. 144 209 IPR006121 GO:0046872(InterPro)
Cco06g0198 363 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 76 IPR044577 GO:0046872(InterPro)
Cco06g0198 363 MobiDBLite consensus disorder prediction 101 118 - -
Cco06g0198 363 Gene3D - 144 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0198 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0198 Cco-Chr6:2080391 Cco06g2001 Cco-Chr6:30106086 1.20E-23 dispersed
Cco03g0387 Cco-Chr3:4180736 Cco06g0198 Cco-Chr6:2080391 4.50E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1297 Blo01g00171 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00185 Cam06g0026 Cec06g0203 Cco06g0198 Clacu06g0202 Cmu06g0195 Cre06g0968 . . . . . . Chy11g01805 Cme11g02338 . . . . . . . . Sed07g0107 . . . . . . . . Bhi12g02426 Tan06g1492 Cmetu11g2271 . Hepe03g1138 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012885 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 0 27