Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0208 ATGTATTGGAAACTCAGAGGCATTGGTAATATGGATGAAAGGTCTACGGATGACATGAAAGGAACTAGAGTTGCTTTGATGGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGTAGCCCAAGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTGCCATTCGGCAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAACACGCCTCCTTGCAGTGGCAACTCACAGTTCGACTTTACTGACAGAAGAAAAAATATGTTGCCCGGGTCGTTGGCTTTTGATTACAAAGAAAAACAACTTGCAATCTCTTGCATTCCCATAGGACTGTTTCCCAAATCATCTGATACTCAGCCATCTCTCAACGTTGGATCCAGCAACGTTGGGAATGTTCAGAAAGTGCTCGGAAACGGATCAAATCGGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCCCCCCAGCCAATTTCATCCACAGCGACGGTCTTGGCTTGGAGAGTGACCCCATTAATTCTGGTTTGGTCTCGGACGGTAGCAGCGATGCCAATATCCGGTGCTACTCAACGTTCCAGGACGGACCTGATGGATCATCTGTTGATTTATTCAGGTTTTGA 987 46.61 MYWKLRGIGNMDERSTDDMKGTRVALMESSSSRLMKRSRAPGSVAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPENNTPPCSGNSQFDFTDRRKNMLPGSLAFDYKEKQLAISCIPIGLFPKSSDTQPSLNVGSSNVGNVQKVLGNGSNRFFNSDCALSLLSTPVEPGEINLSSMSQSNLIPPANFIHSDGLGLESDPINSGLVSDGSSDANIRCYSTFQDGPDGSSVDLFRF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2185093 2186996 + CcPI632755_06g002080.1 Cco06g0208 180808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0208 328 Pfam SBP domain 50 123 IPR004333 GO:0003677(InterPro)
Cco06g0208 328 FunFam Squamosa promoter-binding-like protein 14 42 111 - -
Cco06g0208 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 297 IPR044817 GO:0003677(InterPro)
Cco06g0208 328 Gene3D - 42 111 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco06g0208 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677(InterPro)
Cco06g0208 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0208 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1751 Cco-Chr1:30269990 Cco06g0208 Cco-Chr6:2185093 9.30E-33 dispersed
Cco06g0208 Cco-Chr6:2185093 Cco06g1998 Cco-Chr6:30088734 3.10E-39 dispersed
Cco05g1559 Cco-Chr5:19776876 Cco06g0208 Cco-Chr6:2185093 4.10E-37 transposed
Cco11g1969 Cco-Chr11:32168942 Cco06g0208 Cco-Chr6:2185093 6.60E-30 transposed
Cco03g0385 Cco-Chr3:4148185 Cco06g0208 Cco-Chr6:2185093 2.20E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1273 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00193 Cam06g0016 Cec06g0214 Cco06g0208 Clacu06g0211 Cmu06g0204 Cre06g0977 . . . . . . Chy11g01795 Cme11g02326 . . . . . . . . Sed08g1495 . . . . . . Cpe17g01068 . Bhi12g02448 Tan06g1510 Cmetu11g0895 . Hepe03g1119 . . . . . . . . . Lsi09g01730 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1169 . 181 1009 SBP-box Gene Family AT2G47070 55.4 3.6e-240 828.2
Cco10g1169 . 25 1009 SBP-box Gene Family AT3G60030 54.3 8.0e-274 940.3
Cco06g0208 . 20 163 SBP-box Gene Family AT5G50570 55.8 5.9e-39 158.7
Cco06g1745 . 181 354 SBP-box Gene Family AT1G69170 54.0 1.1e-41 167.9
Cco10g1169 . 181 1009 SBP-box Gene Family AT2G47070 55.4 3.6e-240 828.2
Cco06g1745 . 181 354 SBP-box Gene Family AT1G69170 54.0 1.1e-41 167.9
Cco10g1169 . 25 1009 SBP-box Gene Family AT3G60030 54.3 8.0e-274 940.3
Cco06g0208 . 20 163 SBP-box Gene Family AT5G50570 55.8 5.9e-39 158.7
Cco06g0208 . 20 163 SBP-box Gene Family AT5G50670 55.8 5.9e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59440 PF03110 SBP 7.40E-29 No_clan Cco TF