Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0208 ATGTATTGGAAACTCAGAGGCATTGGTAATATGGATGAAAGGTCTACGGATGACATGAAAGGAACTAGAGTTGCTTTGATGGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGTAGCCCAAGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTGCCATTCGGCAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAACACGCCTCCTTGCAGTGGCAACTCACAGTTCGACTTTACTGACAGAAGAAAAAATATGTTGCCCGGGTCGTTGGCTTTTGATTACAAAGAAAAACAACTTGCAATCTCTTGCATTCCCATAGGACTGTTTCCCAAATCATCTGATACTCAGCCATCTCTCAACGTTGGATCCAGCAACGTTGGGAATGTTCAGAAAGTGCTCGGAAACGGATCAAATCGGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCCCCCCAGCCAATTTCATCCACAGCGACGGTCTTGGCTTGGAGAGTGACCCCATTAATTCTGGTTTGGTCTCGGACGGTAGCAGCGATGCCAATATCCGGTGCTACTCAACGTTCCAGGACGGACCTGATGGATCATCTGTTGATTTATTCAGGTTTTGA 987 46.61 MYWKLRGIGNMDERSTDDMKGTRVALMESSSSRLMKRSRAPGSVAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPENNTPPCSGNSQFDFTDRRKNMLPGSLAFDYKEKQLAISCIPIGLFPKSSDTQPSLNVGSSNVGNVQKVLGNGSNRFFNSDCALSLLSTPVEPGEINLSSMSQSNLIPPANFIHSDGLGLESDPINSGLVSDGSSDANIRCYSTFQDGPDGSSVDLFRF 328
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 2185093 2186996 + CcPI632755_06g002080.1 Cco06g0208 180808
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0208 328 Pfam SBP domain 50 123 IPR004333 GO:0003677(InterPro)
Cco06g0208 328 FunFam Squamosa promoter-binding-like protein 14 42 111 - -
Cco06g0208 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 297 IPR044817 GO:0003677(InterPro)
Cco06g0208 328 Gene3D - 42 111 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco06g0208 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677(InterPro)
Cco06g0208 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1751 Cco-Chr1:30269990 Cco06g0208 Cco-Chr6:2185093 9.30E-33 dispersed
Cco06g0208 Cco-Chr6:2185093 Cco06g1998 Cco-Chr6:30088734 3.10E-39 dispersed
Cco05g1559 Cco-Chr5:19776876 Cco06g0208 Cco-Chr6:2185093 4.10E-37 transposed
Cco11g1969 Cco-Chr11:32168942 Cco06g0208 Cco-Chr6:2185093 6.60E-30 transposed
Cco03g0385 Cco-Chr3:4148185 Cco06g0208 Cco-Chr6:2185093 2.20E-42 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59440 PF03110 SBP 7.40E-29 No_clan Cco TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0208 - - - 0.0