Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0210 ATGGGAAGAGGGAGAGTAGAATTGAAGAGAATAGAGAACAAGATCAATCGACAAGTGACCTTCGCAAAACGAAGAAATGGGCTTTTGAAGAAAGCTTATGAACTTTCTGTTCTTTGCGATGCTGAAGTTGCTCTCATCATCTTCTCTAATAGAGGAAAACTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACCCTAGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCTAACGTCTCCACAAGAGAGGCCTTGGAATTGAGCAGCCAGCAAGAGTATTTGAAGCTCAAAGCTCGCTATGAAGCTCTTCAACGATCTCAAAGGAACCTGTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAACTTGATATGTCACTGAAGCAGATCAGATCAACAAGGACTCAGTACATGCTGGATCAGCTCACTGATCTTCAACGTAAGGAGCATCTTCTTAATGAAGCAAACAAGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTTCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAGCAAGCTCAGCCTTCTGGTGATGCCTTCTTCCATCCTCTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATCCCATAACAGTGGTCACTGCTGGGCCAAGCATGAATAATTTCCTTCCAGGATGGTTGCCTTGA 729 43.21 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLVEGYQVNALQLNQSADDMMYGRQQAQPSGDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2234046 2239806 + CcPI632755_06g002100.1 Cco06g0210 180810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0210 242 FunFam MADS-box transcription factor 7 13 98 - -
Cco06g0210 242 Pfam K-box region 91 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco06g0210 242 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco06g0210 242 Coils Coil 126 146 - -
Cco06g0210 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 191 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco06g0210 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0210 242 Gene3D - 13 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0210 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0210 242 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0210 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0210 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco06g0210 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0210 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0210 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco06g0210 242 Coils Coil 152 172 - -
Cco06g0210 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0023 Cco-Chr6:239157 Cco06g0210 Cco-Chr6:2234046 4.70E-56 dispersed
Cco06g0210 Cco-Chr6:2234046 Cco07g1680 Cco-Chr7:30789828 4.40E-83 dispersed
Cco06g0210 Cco-Chr6:2234046 Cco06g0211 Cco-Chr6:2257893 8.50E-18 tandem
Cco03g0383 Cco-Chr3:4134163 Cco06g0210 Cco-Chr6:2234046 1.80E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59441 PF01486 K-box 2.90E-26 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0210 - - - 0.0